Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1525g00007 ATGGATTGTTTCTGTTGCTTCCATCAGGTGGTTGGAGGACGCTCTTCATGTAGCTCCGGCAAGGGGAGGAGCCATCTGTGGCCAGTTAAGTATGGTTTTAGCCTAGTTAAAGGGAAAGCAAACCACCCAATGGAGGACTATCATGTAGCAAAAATTGTGAAATGCGGAGGGCAAGAATTAGGACTTTTTGCTATATATGATGGACACTTGGGAGACAGTGTGCCAGCCTATTTACAAAAGCATCTCTTTTCTAATATCTTGAAGGAGGAGGACTTCTGGACCGATCCTAGAAATTCTATCATTAAAGCTTACGAGACAACAGATCAGGCCATTCTTTCTCACAGTTCTGATTTGGGGCGAGGAGGATCTACTGCAGTCACTGCAATTCTTATTAATAATCAGAACTTATGGGTCGCAAATGTTGGAGATTCACGGGCAGTTCTGTCAAGGAAGGGGGTGGCCATTCAGATGACCATTGATCATGAGCCAAATACTGAGAGGGGCTTCATCGAGAACAAAGGAGGCTTTGTCTCAAACATGCCAGGAGATGTTGCAAGAGTGAATGGGCAGCTTGCAGTTTCTCGAGCATTTGGTGACAAGAATCTGAAATCACACTTGCGATCTGATCCTGATGTACATCATTTTGATATTAACTCAGATGCTGAGCTTTTGATACTTGCTAGTGATGGTCTTTGGAAGGTAATGGCAAACCAAGAAGCAGTTGATATTGCTAGAAGGATAAAAGATCCACAAAAGGCAGCAAAAAAGCTAATTGCGTAG 780 0.4346 MDCFCCFHQVVGGRSSCSSGKGRSHLWPVKYGFSLVKGKANHPMEDYHVAKIVKCGGQELGLFAIYDGHLGDSVPAYLQKHLFSNILKEEDFWTDPRNSIIKAYETTDQAILSHSSDLGRGGSTAVTAILINNQNLWVANVGDSRAVLSRKGVAIQMTIDHEPNTERGFIENKGGFVSNMPGDVARVNGQLAVSRAFGDKNLKSHLRSDPDVHHFDINSDAELLILASDGLWKVMANQEAVDIARRIKDPQKAAKKLIA 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1525g00007 259 Pfam Protein phosphatase 2C 39 258 IPR001932 -
Vium1525g00007 259 SUPERFAMILY PP2C-like 23 258 IPR036457 -
Vium1525g00007 259 Gene3D - 26 259 IPR036457 -
Vium1525g00007 259 FunFam Probable protein phosphatase 2C 39 22 259 - -
Vium1525g00007 259 ProSiteProfiles PPM-type phosphatase domain profile. 30 259 IPR001932 -
Vium1525g00007 259 PANTHER PROTEIN PHOSPHATASE 25 257 IPR015655 GO:0004722|GO:0006470
Vium1525g00007 259 SMART PP2C_4 26 259 IPR001932 -
Vium1525g00007 259 CDD PP2Cc 29 258 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1525g00007 Vium-Chr1525 39416 43101 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1525g00007 1 259 PP2C-type Phosphatase Gene Family AT1G22280 70.149 7.49e-130 367
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1525g00007 K17506 - gmx:100787659 466.848