Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1525g00006 ATGGATTGTTTCTGTTGCTTCCATCAGGTGGTTGGAGGACGCTCTTCATGTAGCTCCGGCAAGGGGAGGAGCCATCTGTGGCCAGTTAAGTATGGTTTTAGCCTAGTTAAAGGGAAAGCAAACCACCCAATGGAGGACTATCATGTAGCAAAAATTGTGAAATGCGGAGGGCAAGAATTAGGACTTTTTGCTATATATGATGGACACTTGGGAGACAGTGTGCCAGCCTATTTACAAAAGCATCTCTTTTCTAATATCTTGAAGGAGGAGGACTTCTGGACCGATCCTAGAAATTCTATCATTAAAGCTTACGAGACAACAGATCAGGCCATTCTTTCTCACAGTTCTGATTTGGGGCGAGGAGGATCTACTGCAGTCACTGCAATTCTTATTAATAATCAGAACTTATGGGTCGCAAATGTTGGAGATTCACGGGCAGTTCTGTCAAGGAAGGGGGTGGCCATTCAGATGACCATTGATCATGAGCCAAATACTGAGAGGGGCTTCATCGAGAACAAAGGAGGCTTTGTCTCAAACATGCCAGGTAATGGCAAACCAAGAAGCAGTTGA 570 0.4474 MDCFCCFHQVVGGRSSCSSGKGRSHLWPVKYGFSLVKGKANHPMEDYHVAKIVKCGGQELGLFAIYDGHLGDSVPAYLQKHLFSNILKEEDFWTDPRNSIIKAYETTDQAILSHSSDLGRGGSTAVTAILINNQNLWVANVGDSRAVLSRKGVAIQMTIDHEPNTERGFIENKGGFVSNMPGNGKPRSS 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1525g00006 189 Gene3D - 14 188 IPR036457 -
Vium1525g00006 189 PANTHER PROTEIN PHOSPHATASE 25 180 IPR015655 GO:0004722|GO:0006470
Vium1525g00006 189 SUPERFAMILY PP2C-like 23 179 IPR036457 -
Vium1525g00006 189 CDD PP2Cc 29 185 IPR001932 -
Vium1525g00006 189 ProSiteProfiles PPM-type phosphatase domain profile. 30 189 IPR001932 -
Vium1525g00006 189 Pfam Protein phosphatase 2C 39 184 IPR001932 -
Vium1525g00006 189 SMART PP2C_4 26 188 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1525g00006 Vium-Chr1525 39413 43101 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1525g00006 1 183 PP2C-type Phosphatase Gene Family AT1G34750 74.866 1.79e-97 281