Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1525g00005 ATGGCGGAGGGAGCTGCTTATGGGTTGCGTCGTCCATTAGATATTCAGCAATTACAATTTGAAGCCCAGCATCGGTGGTTGCGACCTGCAGAAATTTGTGAAATTCTTCGTAATTATCAGATGTTTCAAATCACTTCAGAACCTCATAACAGGCCACCAAGTGGTTCACTTTTTCTATTTGATAGAAAGGTTTTGAGGTACTTTAGAAAGGATGGACATAATTGGAGAAAGAAAAAGGATGGAAAGACTGTGAAAGAAGCTCATGAAAAGTTGAAGGTTGGAAGTGTCGATGTGTTGCATTGCTACTATGCCCATGGAGAAGATAATGAACATTTTCAAAGGCGAAGCTACTGGATGCTAGAACCGGATATGATGCACATAGTATTTGTCCATTACTTGGAAGTTAAGGGTAACAAAAATATTGTAGTAAATACTGAAGGTGATGAGGTCCCGCTAGATTCCCAAAAGGTTACTTCACTTAGCACAGATTCCATCAGCGCATCATCCAGTTTGATGTCTTTACGTGAAGATGCTGATTCTGAGGATGTCTACCAAGCTAGTTCTGGGTTGCGGCCACTACATGAGTCACAACATATGGGGAATGGTCCATTGCCAGAAAAGATTGATGCTGGTTTGAATAGTTCATATCATACGAGTCCCTTTTCAGGTGATCATGGACAGTCATCAATTTCTGGAACAGATTATATCCCAGTTGTTCACGGGGATAAATTTAGAGGAAATGACACTCCTTATTTTGATGGTGAGAAAACACATGGCATGGCACCATGGGACACTGTATTGCAAAGCACTACCAAATTGCACAATGATCCTTCTCTTGCATCGTTTCCTTCCATCCCTCCTAGTTCAATGGGTAATGTCCTTGAACAAGAACATACCATTTATGGTGACCTTTTAACAGGAAAAAGAGATCTCACTGAGGAAGAAGAGAGCTCTCGGTCTTTGCAACCGAGTTGGCAGATTCCTTTTGAAGACAATTCAGGAGACATGCCAATGTCAAGCCAGAATCAACCATTTGGTCTGCATTATGGATCTGATTATGGCACCAGTTTACTAGGGTATGGAGCTCGTAATGCAAGCTCTGAAATTGCTCCAATCCTGTACAGTTTTAATGGTGATCCAAAAGAGCAGCTTTTGCAGAAAAACTATCCACAAGAGCATGCAGATGGACAATCTCAACATACTCTAAAATCCAATTCTGCAAATAAAGTTCCTGATGAAGAATCTATCAACTATGGCTTAACTATGAAGCGTACGTTATTGGACAGAGATGAGAGCCTGAAGAAGGTTGATAGTTTCTCTCGTTGGGTTACTAAAGAACTTGGAGAGGTAGCTGATTTGAATATGCAGTCCACACCTGGTATTTCATGGAGTACAGATGAATGCCAGCATGTGATAGATGATAGCTCATTGAGCCCATCTCTCTCTCAGGACCAACTGTTTAGTATAAATGATTTTTCACCTAAATGGGCTTATGCGGAGTTAGATATTGAGGTGTTGATTATTGGATCATTTTTGAAGAGTCAACCAGAGGTGACAACATGTAACTGGTCCTGTATGTTTGGGGAAGTTGAGGTTCCAGCTGAGGTTTTAGCTGATGGAATTTTGTGCTGCCAAGCTCCCCGTCATAAAGTTGGACGGGTCCCATTCTATGTAACATGTTCCAATAGGCTAGCTTGTAGTGAAGTGCGGGAATTCGATTTCAGAGAAGGCTTTGCTAGAAATGTAGATTTTGCAGAATATTTTGGCAGTTCAACTGAAATGCGCATTCATTTGCGACTGGAGAAATTTCTTACTTTAAAGCCAGTGAACCCTTCAAACCATTCTTTTGAGGGTGATATGGAGAAAAGGAACTTAATTTTCAAGCTTATTTCACTGAGAGAGGAAGAGGAATATTCTATTAAGGACGAGCAAACTAAAGAATTGGATATATCCCAACACACGGTGAGGGAGCATCTTTTTCAAAGGCAGGTTAAAGAGAAGTTGTACTCATGGCTTCTTCACAAAGTAACTGAGAATGGTAAAGGACCAAATGTATTAGATGAGGATGGGCAAGGTGTGCTACACTTAGCAGCTTTTCTTGGTTATGACTGGGCCATAAATCCAATTATAGCTGCTGGAGTTAATATCAACTTCCGAGATGTGAATGGATGGACAGCTCTTCACTGGGCTGCATTCTGTGGCAGAGAGCGGACAGTTGCTTTCCTGGTCTCCATGAGAGCAGATTGTGGAGCAGTGACAGATCCATCTCCTGCATTTCCATCAGGTAGACCAGCTGCAGATCTTGCCTCTGCAAACGGGCACAAAGGAATCTCTGGTTTTCTTGCTGAGTGTTCATTAACTCAAAATCTTGAATCCCTCAAAGTGGATGATCAAAAAGGTAGTCGGCAAGAAATTTCAGGAATGAAAGTGGTGCAGACAGTTTTAGAACGAACTGCGACACCTATGCTCTATGGTGATATGCCAGATGCCCTCAGCATGAAGGATTCGCTCACTGCTGTTCGAAATGCAACACAAGCTGCTGATCGTATACATCAAGTATTCAGAATGCAGTCATTTCAGAGGAAGCTGTTAACTCAGTATGAAGATGACGATGAGCTTGGATTGTCAGATCAGCAAGCTCTATCTCTTCTAGCTTCTAGGGCTTGTAAATCTGGACAAGGACATGGTTTAGCCAATGCTGCTGCAATACACATACAGAAAAAGTTTCGTGGTTGGAAGAAGAGAAAAGAATTCTTGATGATTCGGCAAAGAGTTGTTAAAATCCAGGCCCATGTAAGAGGTCACCAGGTACGGAAACAGTATAAACCAATCATCTGGTCTGTGGGGATCCTAGAAAAGGTCATATTACGCTGGAGGCGCAAGGGTAGTGGTTTACGTGGATTTCGACCAGATGCGCTTAACAAAGTCCCCAGTCAACAAAATGATTCTCAGAAAGAGGATGATTATGATTTCCTCAAGGAAGGACGGAAACAAAAGGAAGAAAAGATCCAAAAGGCCTTATCAAGAGTGAAGTCCATGGTTCAGTATCCAGAGGCACGTGCCCAATACCGACGTCTGTTAAATGTTGTTGAGGACTTCCGTCAAACCAAGGGAACTAACGAGGGTTTGACCAGTTCTGAAGGGACAGTTGATGGTGTGGAGGATTTAATTGATATTGATATGCTTTTAGACGACGATAATTTCATTCCTATAGCATTTAACTGA 3225 0.4189 MAEGAAYGLRRPLDIQQLQFEAQHRWLRPAEICEILRNYQMFQITSEPHNRPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSVDVLHCYYAHGEDNEHFQRRSYWMLEPDMMHIVFVHYLEVKGNKNIVVNTEGDEVPLDSQKVTSLSTDSISASSSLMSLREDADSEDVYQASSGLRPLHESQHMGNGPLPEKIDAGLNSSYHTSPFSGDHGQSSISGTDYIPVVHGDKFRGNDTPYFDGEKTHGMAPWDTVLQSTTKLHNDPSLASFPSIPPSSMGNVLEQEHTIYGDLLTGKRDLTEEEESSRSLQPSWQIPFEDNSGDMPMSSQNQPFGLHYGSDYGTSLLGYGARNASSEIAPILYSFNGDPKEQLLQKNYPQEHADGQSQHTLKSNSANKVPDEESINYGLTMKRTLLDRDESLKKVDSFSRWVTKELGEVADLNMQSTPGISWSTDECQHVIDDSSLSPSLSQDQLFSINDFSPKWAYAELDIEVLIIGSFLKSQPEVTTCNWSCMFGEVEVPAEVLADGILCCQAPRHKVGRVPFYVTCSNRLACSEVREFDFREGFARNVDFAEYFGSSTEMRIHLRLEKFLTLKPVNPSNHSFEGDMEKRNLIFKLISLREEEEYSIKDEQTKELDISQHTVREHLFQRQVKEKLYSWLLHKVTENGKGPNVLDEDGQGVLHLAAFLGYDWAINPIIAAGVNINFRDVNGWTALHWAAFCGRERTVAFLVSMRADCGAVTDPSPAFPSGRPAADLASANGHKGISGFLAECSLTQNLESLKVDDQKGSRQEISGMKVVQTVLERTATPMLYGDMPDALSMKDSLTAVRNATQAADRIHQVFRMQSFQRKLLTQYEDDDELGLSDQQALSLLASRACKSGQGHGLANAAAIHIQKKFRGWKKRKEFLMIRQRVVKIQAHVRGHQVRKQYKPIIWSVGILEKVILRWRRKGSGLRGFRPDALNKVPSQQNDSQKEDDYDFLKEGRKQKEEKIQKALSRVKSMVQYPEARAQYRRLLNVVEDFRQTKGTNEGLTSSEGTVDGVEDLIDIDMLLDDDNFIPIAFN 1074
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1525g00005 1074 SMART CG_1_2 18 136 IPR005559 GO:0003677
Vium1525g00005 1074 MobiDBLite consensus disorder prediction 391 412 - -
Vium1525g00005 1074 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 898 948 IPR027417 -
Vium1525g00005 1074 Gene3D - 658 856 IPR036770 -
Vium1525g00005 1074 ProSiteProfiles IQ motif profile. 921 945 IPR000048 GO:0005515
Vium1525g00005 1074 ProSiteProfiles CG-1 DNA-binding domain profile. 15 141 IPR005559 GO:0003677
Vium1525g00005 1074 MobiDBLite consensus disorder prediction 192 232 - -
Vium1525g00005 1074 Pfam IQ calmodulin-binding motif 923 942 IPR000048 GO:0005515
Vium1525g00005 1074 Pfam IQ calmodulin-binding motif 900 918 IPR000048 GO:0005515
Vium1525g00005 1074 SUPERFAMILY E set domains 489 574 IPR014756 -
Vium1525g00005 1074 Pfam CG-1 domain 21 134 IPR005559 GO:0003677
Vium1525g00005 1074 SMART iq_5 897 919 IPR000048 GO:0005515
Vium1525g00005 1074 SMART iq_5 920 942 IPR000048 GO:0005515
Vium1525g00005 1074 Pfam IPT/TIG domain 489 563 IPR002909 -
Vium1525g00005 1074 ProSiteProfiles IQ motif profile. 898 927 IPR000048 GO:0005515
Vium1525g00005 1074 SUPERFAMILY Ankyrin repeat 353 783 IPR036770 -
Vium1525g00005 1074 SMART ANK_2a 689 718 IPR002110 GO:0005515
Vium1525g00005 1074 SMART ANK_2a 761 790 IPR002110 GO:0005515
Vium1525g00005 1074 SMART ANK_2a 722 751 IPR002110 GO:0005515
Vium1525g00005 1074 Pfam Ankyrin repeats (3 copies) 671 750 IPR002110 GO:0005515
Vium1525g00005 1074 MobiDBLite consensus disorder prediction 212 232 - -
Vium1525g00005 1074 MobiDBLite consensus disorder prediction 391 414 - -
Vium1525g00005 1074 MobiDBLite consensus disorder prediction 969 988 - -
Vium1525g00005 1074 ProSiteProfiles Ankyrin repeat profile. 689 721 IPR002110 GO:0005515
Vium1525g00005 1074 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 14 1036 - -
Vium1525g00005 1074 Coils Coil 989 1009 - -
Vium1525g00005 1074 Gene3D Immunoglobulins 482 577 IPR013783 -
Vium1525g00005 1074 FunFam Calmodulin-binding transcription activator 2 897 945 - -
Vium1525g00005 1074 FunFam Calmodulin-binding transcription activator 2 482 578 - -
Vium1525g00005 1074 ProSiteProfiles Ankyrin repeat profile. 722 754 IPR002110 GO:0005515
Vium1525g00005 1074 Gene3D - 898 944 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1525g00005 Vium-Chr1525 21736 33151 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1525g00005 1 1040 CAMTA Transcription Factor Family AT5G64220 53.985 0.0 1085
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Vium1525g00005 Ank_2 1.3e-06 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1525g00005 K21596 - gmx:100818124 1861.66