Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1525g00003 ATGGCTTCGTCTCTTTCATTTCCGATCCTCATTCCGTTCGCAATGGAATCCCCGTCGTGTGTGACGGTGCCGCATATGGCATTTTCCAAACCTCCGAAGCACCACCGTCCTTTGGTCAGAGGTCGAGTCAGAGTTAGACCGGTAAATCGCCGCCTCAACTCCGCTACGCTGTTCCGGTGCTCTTCCGCCGCGGACGACGCTGTCATCACCCTTCACGTTGGGGGAATGATGTGCGAAGGATGCGCTAATAGCGTCAAAAAGCTTTTAGAAAGCCGACCTCAAGTGCTGTCTGCTCGGGTAAATTTGGCATCAGAGATAGCAATTGTTTCGCCTGCACCTGAAGAAAAACCGGCACCAAATTATCTAAAGCAATTAGGGGAGGAACTTGCACAGCATTTAACTACCTGTGGTTTTACATCTACCCTTCAAGGAAAATTGGCTTGTCTTTCGTTAAAATTGGACACGATTATTCCACGCTTTGAATATACACTTGATGGGTCTTCAAAGGTTTCAACTTTGTTGCACTACTCAAAGTATAAGGAAGACATGCACCAAAGGTTCCCATCACTAATAGTTGTAGCAAGCAATATTTTGATGTTCTCTATGCCTAATACAGCTTTGGCTGAAACTTGTGAGGCTGATAACTCTTTTTTCAATATGCCTATATTGCTAGCGGTAGCCCTCATTGGAGCCACAGTTGGAGGGTTGCTTGCTCGGCAAAGAAGAAACGAATTACAACGGGTAAACGAGCAATTAATCCAAATCAATGCAGCATTAAGGAAGCAAGCCAAAATCGAGTCTTATGCTCCTAGCTTGAGTTATGCTCCCATTGGTGGTGGTAGGATACCTGATAATGAAATTATTGTTGACCCAAAGAAGCAAGAACTAATTTCTAAGTTGAAAAATGGAAAGAACTTTCTAAGGAATCAACAGTTGGATAAAGCATTCATAGAGTTTAAGAATGCACTTGAGCTTGCCCAGAATCTAAAGGATCCTATCGAAGAAAAAAAGGCTGCCAGAGGTCTAGGAGCCTCATTGCAGAGACAGGGAAAATATCGAGATGCTATAAAATATCATTCCATGGTTTTGGCCATCTCTGAACGAGAAGGGGAGGACTCAGGCAATACAGAGGCGTTTGGGGCAATTGCTGATTGTTACACTGAGCTTGGAGAGCTTGAGAAAGCAGGCCAATTCTATGACAAATATATTGCAAGACTAGAAAAGGACTAA 1230 0.439 MASSLSFPILIPFAMESPSCVTVPHMAFSKPPKHHRPLVRGRVRVRPVNRRLNSATLFRCSSAADDAVITLHVGGMMCEGCANSVKKLLESRPQVLSARVNLASEIAIVSPAPEEKPAPNYLKQLGEELAQHLTTCGFTSTLQGKLACLSLKLDTIIPRFEYTLDGSSKVSTLLHYSKYKEDMHQRFPSLIVVASNILMFSMPNTALAETCEADNSFFNMPILLAVALIGATVGGLLARQRRNELQRVNEQLIQINAALRKQAKIESYAPSLSYAPIGGGRIPDNEIIVDPKKQELISKLKNGKNFLRNQQLDKAFIEFKNALELAQNLKDPIEEKKAARGLGASLQRQGKYRDAIKYHSMVLAISEREGEDSGNTEAFGAIADCYTELGELEKAGQFYDKYIARLEKD 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1525g00003 409 Gene3D - 65 145 - -
Vium1525g00003 409 SUPERFAMILY HMA, heavy metal-associated domain 66 117 IPR036163 GO:0046872
Vium1525g00003 409 Pfam Heavy-metal-associated domain 70 117 IPR006121 GO:0046872
Vium1525g00003 409 Coils Coil 238 262 - -
Vium1525g00003 409 ProSiteProfiles Heavy-metal-associated domain profile. 67 134 IPR006121 GO:0046872
Vium1525g00003 409 PANTHER PROTEIN FLUORESCENT IN BLUE LIGHT, CHLOROPLASTIC 171 409 IPR044243 GO:0015995|GO:0033014
Vium1525g00003 409 Pfam Tetratricopeptide repeat 339 408 - -
Vium1525g00003 409 FunFam Copper-transporting ATPase PAA1, chloroplastic 67 142 - -
Vium1525g00003 409 SUPERFAMILY TPR-like 303 404 IPR011990 GO:0005515
Vium1525g00003 409 CDD HMA 70 141 IPR006121 GO:0046872
Vium1525g00003 409 Gene3D Tetratricopeptide repeat domain 291 409 IPR011990 GO:0005515
Vium1525g00003 409 ProSitePatterns Heavy-metal-associated domain. 73 102 IPR017969 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1525g00003 Vium-Chr1525 12333 20047 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1525g00003 68 141 Primary Pumps ATPases AT4G33520 63.514 3.75e-25 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1525g00003 - - vra:106775694 784.252