Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1523g00001 ATGGCTCATAACTCACAGAACAGTAGCACCTGCTTTGATGATGATTTTGAATGTGATGGAACGGATGATTCTAGAATCTTGCATTGCTGGAACCACCGGAACCTTCACTCTGAATATGAAGATGGTGGTGGATCGGAGGAATTAGCATGTGCTGTGCCCCAGAGTGAGGAAACTGTGAGGGCTATGGTGGCGAGAGAGAGGGAGCATTTCCCGAGGGTTGATTACTTGCAGAGACTAAGGAGCGGGAAGTTGGCTTTGGGTGTTAGGAGGGATGCACTTGATTGGATTTGGAAGGCTCATGCTTATTTTGGCCTTGGACCCTTGAGTTTTTGTTTGGCTGTGAACTACTTGGATCGCTTCCTATCGGTTTTTGACTTACCGAAAGGTGTAAGTTGGACTGTGCAATTGTTAGCTGTAGCGTGCTTGTCAATTGCAGCTAAAATGGACGAGATTAGAGTGCCTCAATCTGTAGATTTACAGGTTGGGGAACCAAAGTTTGTGTTTGAAGCTAAAACCATTAAAAAAATGGAACTAATGGTCTTAAGCAAGTTGAGATGGAAAATGTATGCATTAACTCCTTATTCCTTCATAGAATACTTCCTTAGCAAGATCACTTGTGAGAAACACCCAACAAAATCATCCATTGCAATATCAGTGCAGCTCATCCTCCGTATAATCAGTGGTATCGACTTCTTGGAATTCCGGCCTTCTGAAATTGCTGCTGCGGTGGCAGTTTCTGTTTTAGGAGAATCACAAGCGAAAGATATGGATAAGTCCATTGCTGATCTCTTTATAGTAGAGAAGGGTAGAGTTCTAAAGTGTGCTGAATTGATAAGAGATTTGTCCTTGAACAATGTTGCTGCTAGTGTAGGAAGCAAGGTGCAACATGTGCCTCAAAGTCCTATGGGGGTGATGGATGCTGCTGGGTGCTTAAGTTATAAGAGTGATGAATTAACAGTTGGATCATGTTTAAATTCTTCACATGATAGTCCAAACACTAAGAGTAGTAAAGCAGAAGGACCTTCTAATGAACCTCCAAGTGATGAAATGTGA 1053 0.4255 MAHNSQNSSTCFDDDFECDGTDDSRILHCWNHRNLHSEYEDGGGSEELACAVPQSEETVRAMVAREREHFPRVDYLQRLRSGKLALGVRRDALDWIWKAHAYFGLGPLSFCLAVNYLDRFLSVFDLPKGVSWTVQLLAVACLSIAAKMDEIRVPQSVDLQVGEPKFVFEAKTIKKMELMVLSKLRWKMYALTPYSFIEYFLSKITCEKHPTKSSIAISVQLILRIISGIDFLEFRPSEIAAAVAVSVLGESQAKDMDKSIADLFIVEKGRVLKCAELIRDLSLNNVAASVGSKVQHVPQSPMGVMDAAGCLSYKSDELTVGSCLNSSHDSPNTKSSKAEGPSNEPPSDEM 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1523g00001 350 FunFam D2/4-type cyclin 72 189 - -
Vium1523g00001 350 SUPERFAMILY Cyclin-like 50 188 IPR036915 -
Vium1523g00001 350 MobiDBLite consensus disorder prediction 322 350 - -
Vium1523g00001 350 Gene3D - 61 276 - -
Vium1523g00001 350 MobiDBLite consensus disorder prediction 322 342 - -
Vium1523g00001 350 SMART Cyclin_C_2 191 313 IPR004367 -
Vium1523g00001 350 PANTHER CYCLINS 38 279 IPR039361 -
Vium1523g00001 350 Gene3D - 72 189 - -
Vium1523g00001 350 Pfam Cyclin, N-terminal domain 60 189 IPR006671 -
Vium1523g00001 350 CDD CYCLIN_AtCycD-like_rpt2 192 278 - -
Vium1523g00001 350 ProSitePatterns Cyclins signature. 89 120 IPR006671 -
Vium1523g00001 350 CDD CYCLIN_AtCycD-like_rpt1 88 186 - -
Vium1523g00001 350 SMART cyclin_7 94 182 IPR013763 -
Vium1523g00001 350 Pfam Cyclin, C-terminal domain 192 296 IPR004367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1523g00001 Vium-Chr1523 3213 5838 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1523g00001 54 259 Core Cell Cycle Gene Families AT5G65420 58.654 2.89e-84 254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1523g00001 K18810 - gmx:100794010 483.026