Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1522g00001 TATCCATTGGTTCATGCTGCCAATGCTGGACTTCTTAATGCGACAATTGATGACGCTCGACTTTGCAAACCGGGAACGCTTGATACAACCAAAATAAAGGGAAACATATTGATCTGCATTCGACGTGATAAAACGTCATCAATAGCTCAGAGTTACGAAGCTGGTAATGCTGGCGCAGTGGGAGTGTTTGTGGTCAATGACGACAAAAGTGGCAACACACTTCTAGCCGAGCCTTATAGTATACCAGGTGCAAATGTGGATCCCTATGAGGACGCGGATATAGATGAACGTGAATGGTGGGGAAAAGGAGGTTCCGACAAGAACAATAGCAGGAAACTTGCTGCTTACATGACTGTAGCAAGAACACATTTAGGTATAAAACCTGCTCCAATTATGGCTGGATTCTCATCCAGGGGTCCCAGTGCAGTGCAGCCATTGATACTTAAGCCAGACGTAACTGCCCCTGGTGTGAACATATTGGCGGCTTATTCACTAGCCGCAAGTCCATCAAATCTACCATCAGATAGACGCCGTATTCCTTTCAATATGCAACAGGGAACTTCTATGTCAGGCCCTCATGTTGCTGGTATCGCAGGTCTTCTCAAAACACTTCATCCTGATTGGAGTCCAGCAGCTATTAAATCAGCCATTATGACTACTGCTACCACACTAGATAACAACAACCTACCGATTCGGGATGCATTTGATCAGATAGCAAGTCCGTTTGATTATGGCTCCGGACATATTCAACCTAACCATGCAATGGACCCTGGACTTGTCTATGACATGAGAACAAGGGATTACTTGAACTTCATATGCGCTCATGATCACAGCCAAACTTTTCTCAGATACTTTAACAGCATCTCGTACAATTGCCCAGAGTCCTACAACATTGAAAATCTTAACTATCCTTCTATCACGGTAGCAAATCGAGGGATGAACCCTATAAATGTTACTCGGACAGTTACCAATGTGGGGACTCCAACTAGCACATATGTTGTGAGAGCTAACATAACTGAAGGATTTAAGGTTCTTGTTGAACCAAGTTCATTGTCTTTTAAGACTATTGGAGAAAAGAAGACATTTCGGGTTATTCTTCAGGCAATGAGTTGGCCCAGTAACGGTTTTCCAGTATTTGGGAACTTGTCTTGGACAGATGGAAATCACACAGTAACCAGTCCTATTGTAGTTCTTTAA 1197 0.4336 YPLVHAANAGLLNATIDDARLCKPGTLDTTKIKGNILICIRRDKTSSIAQSYEAGNAGAVGVFVVNDDKSGNTLLAEPYSIPGANVDPYEDADIDEREWWGKGGSDKNNSRKLAAYMTVARTHLGIKPAPIMAGFSSRGPSAVQPLILKPDVTAPGVNILAAYSLAASPSNLPSDRRRIPFNMQQGTSMSGPHVAGIAGLLKTLHPDWSPAAIKSAIMTTATTLDNNNLPIRDAFDQIASPFDYGSGHIQPNHAMDPGLVYDMRTRDYLNFICAHDHSQTFLRYFNSISYNCPESYNIENLNYPSITVANRGMNPINVTRTVTNVGTPTSTYVVRANITEGFKVLVEPSSLSFKTIGEKKTFRVILQAMSWPSNGFPVFGNLSWTDGNHTVTSPIVVL 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1522g00001 398 CDD PA_subtilisin_like 1 93 - -
Vium1522g00001 398 Gene3D - 272 398 - -
Vium1522g00001 398 Pfam Subtilase family 123 227 IPR000209 GO:0006508|GO:0008236
Vium1522g00001 398 ProSitePatterns Serine proteases, subtilase family, serine active site. 186 196 IPR023828 -
Vium1522g00001 398 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 2 397 IPR045051 -
Vium1522g00001 398 Pfam PA domain 2 86 IPR003137 -
Vium1522g00001 398 SUPERFAMILY Subtilisin-like 118 256 IPR036852 GO:0004252|GO:0006508
Vium1522g00001 398 Pfam Fibronectin type-III domain 300 397 IPR041469 -
Vium1522g00001 398 Gene3D Peptidase S8/S53 domain 125 268 IPR036852 GO:0004252|GO:0006508
Vium1522g00001 398 ProSiteProfiles Serine proteases, subtilase domain profile. 1 255 - -
Vium1522g00001 398 Gene3D - 1 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1522g00001 Vium-Chr1522 5 2131 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1522g00001 1 397 Subtilisin-like Serine Gene Family AT2G04160 45.865 4.52e-112 343
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1522g00001 - - vum:124826760 802.357