Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium15228g00002 ATGGATCATAAACACAGTCACGTCCACACCACTCCCCTTGTCTTCGCCCTCACCGTCTCTTCTTTCCTCTGCATCGCTTTGCCACGTTCCCACTCTCAACCATCGCCGTCGCCACCGGTTTGTGCAGAGCAGTTATACCGGTGCAAGATAAGCGTCTCCGCCATCTTCGATCCTCCCTGGGAAAAGATTCCACCCTCTCAATGTAACGGCGCCGACCCATCATCCCTGCTCAGCTGCCATAGTGGCTATGGATCTCAAAATTTCACAGTGAAGGATATCGACAATACCACTCACACCATGAAAGTGATGCTAAGAGCCCCTGTCAACCATGTCTGTTCTCCTCACTTTTTTCTCAATTACGAGAACTTCAACAGCACTCTGTTCCTGCATAACGCGTCAGTGCATAAAATCATCATATACGAAGATTGTCCTACAATCCCAGATTTCCCTTCAAAACGCAGTTTTAAGTGCGGGGATGTTCTGTATTATTTTGAAGAGGGGTACACAGAAAAGGAGATGCTCGACAGATACCCATCGCTTAAGGATTGCAAGGGGGAAACTTTTGACGTGCCTGCTTCCCGTCCTCTGGATCGTTACGAGGATACTGATGACGGTGCTGGAGTTCTGGAAGAAGCTCTCAATGATCCGTTTGAGGTCAACTATAGTAGTATTCCTGATGGTTGCACAAGATGCAGAGAAAGTGACGAAAGTTGCTCGCCAGATGGTAATGGTTATGATGAACATCTAGTTTCATGCAACTACTATTGCCCAAATGAACAGTGTTCTCCCGAAACAAGTGTTACAAGTTCAGCAATTGCAGCCGTATTGATATTAATTTCAATTTTGTGTGTAAGATACAAGTCACCAATATGGGAAGCAAATTTTGGGTTGGCTTCAAGAAGTAATAAAAATATCGAAGCATTCCTTAAAATTCATGGCCCTCTAGCTCTGAAAAGATATAAACTATCAGATGTTAAGAAAATGACCAAGAACTTCAGAGTAAAGCTGGGACAAGGTGGTTTTGGTGCAGTGTACAAGGGAGAGTTATCCAATGGTAGTTTTGTGGCTGTAAAGATGTTGAGTGCATCCAAAAAAAATGGTGAAGAATTTGTGAATGAGGTTGCCAGCATCAGTAGAACTTCTCATGTTAACGTTGTCTCTCTTCTTGGATTTTGTTTGAAAGGTCCGAAGAGAGCTCTCATCTATGAATTCATGTCCTATGGTTCCCTTGACAAATTCATTTACACAACAAGGGATGAAACCCTTCCACCCTTGTGTTGGAATATTATATATCAAATTGCAAGGGACATAGCTCGAGGCTTAGAATACTTGCATAAGGGATGCAACACTCGAATTGTTCACTTTGACATAAAACCACATAACATTCTTCTGAATGAGAACTTCTGTGCAAAGATATCTGATTTTGGGTTGGCAAAACTGTGTCCTAGGAATGAAAGTATTGTTTCCTTGTCAGATGCTAGAGGAACAATGGGGTATGTAGCTCCAGAAATGTGGAGCAGAAATTTTGGAAGAGTTTCGAATAAGTCTGATGTTTATAGTTATGGAATGGTGCTGCTGGAGATGGTAGGAGGAAGGAAAAACATCAATGGTGAAGCAAGTAATACAAGTGAGATATACTTCCCACACTGGGCACACAAAAAACTTGAGTTGGACAATGATTTGAGACCAGATATGGAGATGACAGCAGAAGAAAATGAGATTGCAAAGAGGTTGGCGATGGTGGGTTTATGGTGTACTCAAACGTTTCCTAATGATAGACCTACAATGAGCAGAGTGATTGATATGTTAGAAGGTAGCATGGATTCCTTACAAATCCCACCCAAACCTTTGCTTTCTTCTCCTACTAGATCACTGTCAGAATATTCCATCTCCTGA 1896 0.4235 MDHKHSHVHTTPLVFALTVSSFLCIALPRSHSQPSPSPPVCAEQLYRCKISVSAIFDPPWEKIPPSQCNGADPSSLLSCHSGYGSQNFTVKDIDNTTHTMKVMLRAPVNHVCSPHFFLNYENFNSTLFLHNASVHKIIIYEDCPTIPDFPSKRSFKCGDVLYYFEEGYTEKEMLDRYPSLKDCKGETFDVPASRPLDRYEDTDDGAGVLEEALNDPFEVNYSSIPDGCTRCRESDESCSPDGNGYDEHLVSCNYYCPNEQCSPETSVTSSAIAAVLILISILCVRYKSPIWEANFGLASRSNKNIEAFLKIHGPLALKRYKLSDVKKMTKNFRVKLGQGGFGAVYKGELSNGSFVAVKMLSASKKNGEEFVNEVASISRTSHVNVVSLLGFCLKGPKRALIYEFMSYGSLDKFIYTTRDETLPPLCWNIIYQIARDIARGLEYLHKGCNTRIVHFDIKPHNILLNENFCAKISDFGLAKLCPRNESIVSLSDARGTMGYVAPEMWSRNFGRVSNKSDVYSYGMVLLEMVGGRKNINGEASNTSEIYFPHWAHKKLELDNDLRPDMEMTAEENEIAKRLAMVGLWCTQTFPNDRPTMSRVIDMLEGSMDSLQIPPKPLLSSPTRSLSEYSIS 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium15228g00002 631 SMART serkin_6 330 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium15228g00002 631 FunFam serine/threonine-protein kinase PBS1-like 299 404 - -
Vium15228g00002 631 ProSiteProfiles Protein kinase domain profile. 330 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium15228g00002 631 MobiDBLite consensus disorder prediction 611 631 - -
Vium15228g00002 631 ProSitePatterns Protein kinases ATP-binding region signature. 336 358 IPR017441 GO:0005524
Vium15228g00002 631 FunFam PR5-like receptor kinase 405 615 - -
Vium15228g00002 631 Gene3D Transferase(Phosphotransferase) domain 1 405 612 - -
Vium15228g00002 631 Gene3D Phosphorylase Kinase; domain 1 295 404 - -
Vium15228g00002 631 SUPERFAMILY Protein kinase-like (PK-like) 313 604 IPR011009 -
Vium15228g00002 631 PANTHER RUST RESISTANCE KINASE LR10-RELATED 300 620 IPR045874 GO:0004672
Vium15228g00002 631 Pfam Protein tyrosine and serine/threonine kinase 333 603 IPR001245 GO:0004672|GO:0006468
Vium15228g00002 631 ProSitePatterns Serine/Threonine protein kinases active-site signature. 452 464 IPR008271 GO:0004672|GO:0006468
Vium15228g00002 631 MobiDBLite consensus disorder prediction 613 631 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium15228g00002 Vium-Chr15228 4863 8497 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium15228g00002 189 629 Receptor kinase-like Gene Family AT5G38260 44.053 3.42e-120 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vium15228g00002 PK_Tyr_Ser-Thr 9.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium15228g00002 - - vra:106756549 905.975