Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium15228g00001 ATGGTCACAGCTGTACCTATTTATGTGTTAACAGGTGTTACAAGTTCAGCAATTGCAGCCGTATTGATATTAATTTCAATTTTGTGTGTAAGATACAAGTCACCAATATGGGAAGCAAATTTTGGGTTGGCTTCAAGAAGTAATAAAAATATCGAAGCATTCCTTAAAATTCATGGCCCTCTAGCTCTGAAAAGATATAAACTATCAGATGTTAAGAAAATGACCAAGAACTTCAGAGTAAAGCTGGGACAAGGTGGTTTTGGTGCAGTGTACAAAGGAAAGTTATCCAATGGTAGTCTTGTGGCTGTAAAGATGTTGAGTGCATCCAAAAAAAATGGTGAAGAATTTATGAATGAGGTTGCCAGCATCAGTAGAACTTCTCATGTTAACGTTGTCTCTCTTCTTGGATTTTGTTTGAAAGGTCACAAGAGAGCTCTCATCTATGAATTCATGTCCTATGGTTCCCTTGACAAATTCATTTACACAACAAGGGATGAAACCCTTCCACCCTTGTGTTGGAATATTATATATCAAATTGCAAGGGACATAGCTCGAGGCTTAGAATACTTGCATAAGGGATGCAACACTCGAATTGTTCACTTTGACATAAAACCACATAACATTCTTCTGAATGAGAACTTCTGTGCAAAGATATCTGATTTTGGGTTGGCAAAACTGTGTCCTAGGAATGAAAGTATTGTTTCCTTGTCAGATGCTAGAGGAACAATGGGGTATGTAGCTCCAGAAATGTGGAGCAGAAATTTTGGAAGAGTTTCGAATAAGTCTGATGTTTATAGTTATGGAATGGTGCTGCTGGAGATGGTAGGAGGAAGGAAAAACATCAATGGTGAAGCAAGTAATACAAGTGAGATATACTTCCCACACTGGGCACACAAAAAACTTGAGTTGGACAATGATTTGAGACCAGATATGGAGATGACAGCAGAAGAAAATGAGATTGCAAAGAGGTTGGCGATGGTGGGTTTATGGTGTACTCAAACGTTTCCTAATGATAGACCTACAATGAGCAGAGTGATTGATATGTTAGAAGGTAGCATGGATTCCTTACAAATCCCACCCAAACCTTTGCTTTCTTCTCCTACTAGATCACTGTCAGAATATTCCATCTCCTGA 1134 0.3854 MVTAVPIYVLTGVTSSAIAAVLILISILCVRYKSPIWEANFGLASRSNKNIEAFLKIHGPLALKRYKLSDVKKMTKNFRVKLGQGGFGAVYKGKLSNGSLVAVKMLSASKKNGEEFMNEVASISRTSHVNVVSLLGFCLKGHKRALIYEFMSYGSLDKFIYTTRDETLPPLCWNIIYQIARDIARGLEYLHKGCNTRIVHFDIKPHNILLNENFCAKISDFGLAKLCPRNESIVSLSDARGTMGYVAPEMWSRNFGRVSNKSDVYSYGMVLLEMVGGRKNINGEASNTSEIYFPHWAHKKLELDNDLRPDMEMTAEENEIAKRLAMVGLWCTQTFPNDRPTMSRVIDMLEGSMDSLQIPPKPLLSSPTRSLSEYSIS 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium15228g00001 377 SMART serkin_6 76 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium15228g00001 377 Gene3D Phosphorylase Kinase; domain 1 41 150 - -
Vium15228g00001 377 ProSiteProfiles Protein kinase domain profile. 76 364 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium15228g00001 377 MobiDBLite consensus disorder prediction 359 377 - -
Vium15228g00001 377 ProSitePatterns Protein kinases ATP-binding region signature. 82 104 IPR017441 GO:0005524
Vium15228g00001 377 MobiDBLite consensus disorder prediction 357 377 - -
Vium15228g00001 377 Gene3D Transferase(Phosphotransferase) domain 1 151 358 - -
Vium15228g00001 377 FunFam PR5-like receptor kinase 151 361 - -
Vium15228g00001 377 FunFam serine/threonine-protein kinase PBS1-like 45 150 - -
Vium15228g00001 377 CDD STKc_IRAK 82 351 - -
Vium15228g00001 377 ProSitePatterns Serine/Threonine protein kinases active-site signature. 198 210 IPR008271 GO:0004672|GO:0006468
Vium15228g00001 377 Pfam Protein tyrosine and serine/threonine kinase 79 349 IPR001245 GO:0004672|GO:0006468
Vium15228g00001 377 SUPERFAMILY Protein kinase-like (PK-like) 59 350 IPR011009 -
Vium15228g00001 377 PANTHER RUST RESISTANCE KINASE LR10-RELATED 48 366 IPR045874 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium15228g00001 Vium-Chr15228 1730 3001 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium15228g00001 12 375 Receptor kinase-like Gene Family AT1G66910 50.272 4.82e-121 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vium15228g00001 PK_Tyr_Ser-Thr 1.9e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium15228g00001 - - vra:106756549 665.996