Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium15222g00004 ATGCCAACTGAGAATGGGTTTACAAAGAGCAGATCTGGTGGAATGAGCATCTCCTTGGCCGGTCCAGATGGTCGAGTAATGGGGGGTGGACTGGCCGGTTTGCTGGTAGCTGCCGGTCCTGTGCAGGTTGTTGTGGCTAGTTTTGTTCCTGGTCACCAGCTGGAACAGAAACCGAAAAAGCCAAGGGTGGAGCATGTTCCAATGACTGCACCTATACATGCCAGCCCTATACATGTGAGCCCTACTTCTGCAGATGATATAAGAATTGATCTTGGTGGAGCAAAGCCAATCTTGACACCAGCAGCTTTTCAAATGGACAGCATCTTTGGCAATGGACAACCTTCTGATGATGAGGCTCCTTTCCCTGAAGAAGAAGAAGAAGAGCCTAACACGAGCTATGCAGATGCTGAAGTTGCTAGCTAA 423 0.4917 MPTENGFTKSRSGGMSISLAGPDGRVMGGGLAGLLVAAGPVQVVVASFVPGHQLEQKPKKPRVEHVPMTAPIHASPIHVSPTSADDIRIDLGGAKPILTPAAFQMDSIFGNGQPSDDEAPFPEEEEEEPNTSYADAEVAS 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium15222g00004 140 MobiDBLite consensus disorder prediction 118 132 - -
Vium15222g00004 140 MobiDBLite consensus disorder prediction 106 140 - -
Vium15222g00004 140 CDD DUF296 10 48 IPR005175 -
Vium15222g00004 140 SUPERFAMILY AF0104/ALDC/Ptd012-like 13 57 - -
Vium15222g00004 140 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 1 99 IPR039605 GO:0003680
Vium15222g00004 140 Gene3D - 3 65 - -
Vium15222g00004 140 Pfam Plants and Prokaryotes Conserved (PCC) domain 12 49 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium15222g00004 Vium-Chr15222 15635 16956 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium15222g00004 1 63 AT-hook Motif Nuclear Localized (AHL) Family AT5G62260 71.875 9.64e-24 93.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium15222g00004 - - vum:124823003 244.588