Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium15222g00003 ATGGAGGAAAAAGAGATTTTTAGTTCTGGGCAGGCTGTTAAGGTTGTCGAGCCCCCCCAGAGCTTCCACGTGGCACTAAGATCCGTGCAGTTTTCTGGGCCCACGGGGGATTCGCCGGCACCGGTGAGTGCTCCGGTGATTACTTCCGGTAGTACAGAAGGGAAGAAGAAGAGGGGCCGGCCTAGGAAATATGGACCGGACGGCAATGTGGCGCTGTCGCCGATGCCGATATCATCGTCGATTCCATTGACCGGAGACTTCTCAGTCTGGAAAAAGGGCAGAGGAAAGCCAGTTGAATCAATCAAGAAGTCTTTTAAGTTTTATGAAGTTGAAGGTCAAGGTGCAGGACAAGGTGATCAAATTGCATACTCAGTTGGTGCCAATTTCACACCTCACATCCTTATAGTAAATGCTGGCGAGGATGTTACTATGAAGATTATGTCCTTCTCTCAACAAGGATTTCAAGCTATTTGCATTCTGTCTGCAAATGGCACAATTTCAAATGTTACACTACGCCAACCAACTTCTTCTGGTGGTACTTTAACATATGAGGGGCGCTTTGAAATTCTTTCCTTGACTGGTTCATATATGCCAACTGAGAATGGGTTTACAAAGAGCAGATCTGGTGGAATGAGCATCTCCTTGGCCGGTCCAGATGGTCGAGTAATGGGGGGTGGACTGGCCGGTTTGCTGGTAGCTGCCGGTCCTGTGCAGGTTGTTGTGGCTAGTTTTGTTCCTGGTCACCAGCTGGAACAGAAACCGAAAAAGCCAAGGGTGGAGCATGTTCCAATGACTGCACCTATACATGCCAGCCCTATACATGTGAGCCCTACTTCTGCAGATGATATAAGAATTGATCTTGGTGGAGCAAAGCCAATCTTGACACCAGCAGCTTTTCAAATGGACAGCATCTTTGGCAATGGACAACCTTCTGATGATGAGGCTCCTTTCCCTGAAGAAGAAGAAGAAGAGCCTAACACGAGCTATGCAGATGCTGAAGTTGCTAGCTAA 1011 0.4797 MEEKEIFSSGQAVKVVEPPQSFHVALRSVQFSGPTGDSPAPVSAPVITSGSTEGKKKRGRPRKYGPDGNVALSPMPISSSIPLTGDFSVWKKGRGKPVESIKKSFKFYEVEGQGAGQGDQIAYSVGANFTPHILIVNAGEDVTMKIMSFSQQGFQAICILSANGTISNVTLRQPTSSGGTLTYEGRFEILSLTGSYMPTENGFTKSRSGGMSISLAGPDGRVMGGGLAGLLVAAGPVQVVVASFVPGHQLEQKPKKPRVEHVPMTAPIHASPIHVSPTSADDIRIDLGGAKPILTPAAFQMDSIFGNGQPSDDEAPFPEEEEEEPNTSYADAEVAS 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium15222g00003 336 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 37 277 IPR039605 GO:0003680
Vium15222g00003 336 Pfam Plants and Prokaryotes Conserved (PCC) domain 131 245 IPR005175 -
Vium15222g00003 336 SUPERFAMILY AF0104/ALDC/Ptd012-like 128 252 - -
Vium15222g00003 336 MobiDBLite consensus disorder prediction 30 68 - -
Vium15222g00003 336 MobiDBLite consensus disorder prediction 302 336 - -
Vium15222g00003 336 ProSiteProfiles PPC domain profile profile. 126 268 IPR005175 -
Vium15222g00003 336 MobiDBLite consensus disorder prediction 314 328 - -
Vium15222g00003 336 Gene3D - 131 261 - -
Vium15222g00003 336 FunFam AT-hook motif nuclear-localized protein 1-like 131 261 - -
Vium15222g00003 336 CDD DUF296 130 244 IPR005175 -
Vium15222g00003 336 MobiDBLite consensus disorder prediction 30 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium15222g00003 Vium-Chr15222 7976 14098 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium15222g00003 38 252 AT-hook Motif Nuclear Localized (AHL) Family AT4G25320 63.677 5.88e-86 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium15222g00003 - - gmx:102667678 477.633