LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium1521g00015	ATGTGGCTACAGAAGAATAATTGCGACAAGAAGGATGGGGTGCATGGAATAGTGGCAGTGGCAATTGATTCAGACAAGGGGAGCCAGAATGCACTAAAATGGACCATTGATCATCTCCTCCCCAAAGGGTCAAATGTAGTTCTCATTCATGTCAAGACTAAGCCCTCTTCTCTTTATCCATCAGTTTCTCTTGTGAACCCTAGGGCAAATGGTATTGCTGAGCATGCACTTGTTTGCAAGGACCCTGATGAACAAACCAAAGAAGTTTTCCATCCATACCGTGTATTCTGTGCACGGAAAGATATACACTGCAAGGACGTTGTAATAGAAGATGTAGACGTAGCCAAAGCTTTAATTGAATATGCTTCTCAATATGCAATTGAGCACTTAGTCATAGGCTCTTCAAACAAAGGTGGTTTTCTTAGAAGATTCAAGATAGCAGATATTCCAGGAACAGTCTCAAAAGGGGCACCAGATTTCTGCACAGTATATGTTGTTACTAAAGGGAAGATTCAATCCATGCGATCTGCTTCTCGTGCTGCTCCAACCTTTTCCCCTCTTCAAAACCAACTTTCTCAACACAGTGGCAGATTAGACCTACCAGAACCACGTGTAGTCAAAGGGCTTGAAAGGAGGTCTTTTGAAGCACCACGCCGTATATCACATGATGAACCAGAGCCCTTCAGGTCACCATTTACTAGGAAAGGAGTGAATAATGACAGGTATGGGGATATACCGGGGCCAGAGACTGACATAAGTTTTGTAAGCTCTAGAAGATCAAGTACAGATCGCTTATTCCCATTGTATAACAACAGCAACCACTACCTAGAGTCCAATCCCCGGCTATCATATAGCTCTGACATAGATGGAAATAATTATAGCTTTGAGTCAATTCCGTTTGGAAGAAGGTCTATGGATATCTGCTCTGATTTCTCATCCTTCTCACAAGACAGTGATGGCTTGCCATCCTCTGCATCACAGGGCATGGATGATGTGGAGGCTGAAATGAGAAGACTAAAATTGGAGCTCAAGCAAACAATGGAAATGTATAGCAATGCCTGCAAAGAAGCACTCACCGCACAGCAAAAGGCTGTGGAACTCCAACGCTGGAAATTAGAGGAAGAGAGGAGATTGGAGGAGGCAAGGCTTGCTGAAGAAGCTGCATTGGCGATTGCAGAAAAGGAGAAGGCAAGATCAAAAGCAGCCATCGAGACAGCTGAAGCACAGAAGAGGATTGCAGAACTGGAATCACAGAAGAGAATCAGTGCTGAAATGAAAGCATTGACGGAAACAGAAGAGAAAAGAAAAGCAGTGAATGCTTTATCAGGCACTGGTTTGAGGTATAGAAGGTACGCAATTGAGGAGATTGAAGCTGCCACAAATTTTTTTTCTGAGTCACAGAAGATCGGAGAAGGGGGTTATGGTCCAGTTTATAATTGCCTTCTGGACCATACACCTGTGGCAGTGAAGGTTCTACGGCCTGACGCAGCACAAGGAAGGTCACAGTTTCAAAGAGAGGTTGAGGTACTGAGTTGCATTCGGCATCCAAACATGGTTCTCCTCATAGGTGCCTGCCCTGAGTATGGTTGCCTTGTCTATGAGTACATGGCCAATGGAAGCTTAGATGACTGCCTCTTCTGCCGAGGAAACAGGCCCCCAATTCCATGGCAGCTCAGGTTCAAAATTGCAGCTGAAATTGGCACAGGCTTGTTGTTCCTCCATCAGACCAAACCTGAGCCTCTTGTGCACAGAGACCTTAAACCAGCCAACATCTTGCTGGACAGAAACTATGTGGCCAAGATCAGTGATGTAGGTTTGGCCAGGCTAGTTCCACCATCTGTGGCAGACTCTGTCACGCAGTATCACATGACATCCGCAGCCGGAACCTTCTGCTACATAGATCCTGAGTACCAGCAGACAGGAATGCTGGGAGTGAAGTCTGACATATACTCTCTTGGGATCATTTTCTTGCAAATTTTGACAGCAAAACCTCCAATGGGTTTGACTCATAATGTTCAGAGAGCCATTGAGAAGGGAACATTTATTGATATGTTGGATCCAAAAGTGCCTGACTGGCCAACAGAGGATGCCTTGGTCTTTGCAAAGATTGCTGTCAGGTGTGCTGAACTGAGGAGGAGAGACAGGCCTGATCTTGGCAAGGAAGTGCTGCCTGAACTAAACAGGCTAAGAGAACATGCTGAGAGCCATGATCACTATTCAATGTTTAGTGGCTATGCTAGCCCTTCCAATCAGAGCCAAGTTTCTCTGGATGAAGCCAGTTCTTCACTTCCTCATTCTGGGGAGAGTTCATGA	2313	0.4535	MWLQKNNCDKKDGVHGIVAVAIDSDKGSQNALKWTIDHLLPKGSNVVLIHVKTKPSSLYPSVSLVNPRANGIAEHALVCKDPDEQTKEVFHPYRVFCARKDIHCKDVVIEDVDVAKALIEYASQYAIEHLVIGSSNKGGFLRRFKIADIPGTVSKGAPDFCTVYVVTKGKIQSMRSASRAAPTFSPLQNQLSQHSGRLDLPEPRVVKGLERRSFEAPRRISHDEPEPFRSPFTRKGVNNDRYGDIPGPETDISFVSSRRSSTDRLFPLYNNSNHYLESNPRLSYSSDIDGNNYSFESIPFGRRSMDICSDFSSFSQDSDGLPSSASQGMDDVEAEMRRLKLELKQTMEMYSNACKEALTAQQKAVELQRWKLEEERRLEEARLAEEAALAIAEKEKARSKAAIETAEAQKRIAELESQKRISAEMKALTETEEKRKAVNALSGTGLRYRRYAIEEIEAATNFFSESQKIGEGGYGPVYNCLLDHTPVAVKVLRPDAAQGRSQFQREVEVLSCIRHPNMVLLIGACPEYGCLVYEYMANGSLDDCLFCRGNRPPIPWQLRFKIAAEIGTGLLFLHQTKPEPLVHRDLKPANILLDRNYVAKISDVGLARLVPPSVADSVTQYHMTSAAGTFCYIDPEYQQTGMLGVKSDIYSLGIIFLQILTAKPPMGLTHNVQRAIEKGTFIDMLDPKVPDWPTEDALVFAKIAVRCAELRRRDRPDLGKEVLPELNRLREHAESHDHYSMFSGYASPSNQSQVSLDEASSSLPHSGESS	770

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium1521g00015	770	MobiDBLite	consensus disorder prediction	740	770	-	-
	Vium1521g00015	770	Pfam	Protein kinase domain	464	696	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium1521g00015	770	SMART	serkin_6	463	726	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium1521g00015	770	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	581	593	IPR008271	GO:0004672\|GO:0006468
	Vium1521g00015	770	Gene3D	HUPs	17	166	IPR014729	-
	Vium1521g00015	770	MobiDBLite	consensus disorder prediction	221	249	-	-
	Vium1521g00015	770	MobiDBLite	consensus disorder prediction	742	770	-	-
	Vium1521g00015	770	ProSiteProfiles	Protein kinase domain profile.	463	739	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium1521g00015	770	FunFam	U-box domain-containing protein 51	536	736	-	-
	Vium1521g00015	770	Pfam	Universal stress protein family	18	144	IPR006016	-
	Vium1521g00015	770	SUPERFAMILY	Protein kinase-like (PK-like)	446	718	IPR011009	-
	Vium1521g00015	770	FunFam	Adenine nucleotide alpha hydrolase-like domain kinase	435	535	-	-
	Vium1521g00015	770	PANTHER	OS02G0152300 PROTEIN	18	742	-	-
	Vium1521g00015	770	Gene3D	Phosphorylase Kinase; domain 1	443	535	-	-
	Vium1521g00015	770	SUPERFAMILY	Adenine nucleotide alpha hydrolases-like	18	144	-	-
	Vium1521g00015	770	CDD	STK_N	17	169	-	-
	Vium1521g00015	770	Coils	Coil	329	418	-	-
	Vium1521g00015	770	Gene3D	Transferase(Phosphotransferase) domain 1	536	746	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium1521g00015	Vium-Chr1521	96258	102777	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium1521g00015	1	759	Receptor kinase-like Gene Family	AT1G78940	55.740	0.0	772

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-IXb	Vium1521g00015		Pkinase	1.8e-40	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium1521g00015	-		-	gmx:100779981	1177.93