Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1521g00001 ATGGCTGTGGAACTCATGGGGTTCCCCAAAATCGATGATCAAAAGGCCATCCAAGAGGCTGCATCGGAAGGCCTCAAGGGCATGGAACACCTGATCCGAATCCTCTCCCACCAACCCTCTCACTTGAACACCGACCTCACCGACGTTACCGTCTCCAAGTTCAAGAAACTCATCTCCCTCCTCAACCGAACCGGCCACGCCCGCTTCAGACGTGCTCCGCTTCAGGTTAACCCCCCTGAACCGGTTCAAACCCCCGAGCCTGTTCAAACCCCCGCACCGGCTCACAATCCTCCCTCTGCACCGCTCCATCTTCCTCCCCCGCAAACCGCCAACCTCTCTCTGCCGGCGCTCTTCGCGTCGCCGGCGCCGGTTCACCATGCCTCGGGGAGCGTCACGCTCGACTTCACCAAGCCGCACAACGCGCTCCGGAACTCCAAGGCGAAGTCCGTGGAACTCGAGTTCTCCAAGGAGACCTTCAGCGTCTCCTCCAACTCCTCCTTCTTGTCCTCCGCCATCACCGGCGACGGCAGCGTCTCCAACGGCAAGATCTTTCTCGCCCCGCCACCTCCGCCTCCCGCGACCTCCGCCGGGAAACCGCCGGCGTTCAAGAAACGCTGCCTCGAACACCGCGAACACTCCGACGACGTCTCCGGATCCGGCAAGTGCCACTGCGTCAAGCGAAGGAAAAATAGGGTGAAGAAGACCGTGAGAGTGCCTGCGATAAGTTCAAAGATCGCCGATATTCCGCCGGACGAGTACTCGTGGAGGAAGTACGGTCAGAAACCGATCAAGGGCTCACCGTACCCTCGGGGGTATTACAAGTGCAGCACGGTGAGAGGGTGTCCCGCAAGGAAACACGTGGAGCGTGCACCAGACGATCCGGCGATGCTGATAGTGACGTACGAGGGGGAGCACAGGCACGCGGTTCAGGCCGCGATGCAGGAGAACGCAGCCGGAGTGGTGGGTTTGGTGTTCGAGTCAACGTAG 987 0.6069 MAVELMGFPKIDDQKAIQEAASEGLKGMEHLIRILSHQPSHLNTDLTDVTVSKFKKLISLLNRTGHARFRRAPLQVNPPEPVQTPEPVQTPAPAHNPPSAPLHLPPPQTANLSLPALFASPAPVHHASGSVTLDFTKPHNALRNSKAKSVELEFSKETFSVSSNSSFLSSAITGDGSVSNGKIFLAPPPPPPATSAGKPPAFKKRCLEHREHSDDVSGSGKCHCVKRRKNRVKKTVRVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTVRGCPARKHVERAPDDPAMLIVTYEGEHRHAVQAAMQENAAGVVGLVFEST 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1521g00001 328 MobiDBLite consensus disorder prediction 78 102 - -
Vium1521g00001 328 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 15 314 IPR044810 GO:0003700
Vium1521g00001 328 FunFam WRKY transcription factor 65 233 310 - -
Vium1521g00001 328 SMART WRKY_cls 249 309 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium1521g00001 328 ProSiteProfiles WRKY domain profile. 244 310 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium1521g00001 328 SUPERFAMILY WRKY DNA-binding domain 247 309 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium1521g00001 328 Pfam WRKY DNA -binding domain 251 307 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium1521g00001 328 MobiDBLite consensus disorder prediction 69 102 - -
Vium1521g00001 328 Gene3D WRKY domain 236 310 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium1521g00001 328 Pfam Plant zinc cluster domain 203 247 IPR018872 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1521g00001 Vium-Chr1521 802 8267 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1521g00001 1 327 WRKY Transcription Factor Family AT2G24570 60.405 1.51e-118 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vium1521g00001 WRKY 8.8e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1521g00001 - - pvu:PHAVU_001G060200g 556.984