Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium15216g00002 ATGGAAGGATTGGATGGTTTTATAGAGAGGCTTTTGGAAGTAAGGAAGAACAGGGGGAAACGGATTCAACTGGTGGAGTCAGAAATTCGGAACCTTTGCAGCACGGCCAAAGATCTGTTACTAAGCCAGCCAAACCTTCTGGAATTGGAGGCTCCCATAAACGTCTGTGGGGACATACACGGGCAGTATCCAGACCTGTTGCGACTGTTCGAGTACGGTGGGTTTCCGCCGGATTCGAATTATCTATTCCTGGGAGACTACGTGGACAGAGGAAAACAGAGCGTGGAGACAATATGCCTGCTCCTGGCCTACAAGATCAAATTCCCAGAGAACTTCTTCCTTCTCCGAGGAAACCACGAGTGTGCCTCTATTAATAGAATCTATGGCTTCTACGACGAGTGCAAGCGCAGATTCAGCGTTCGCCTCTGGAAGATATTCACAGACTGCTTCAACTGTCTCCCCGTTGCCGCAGTCATCGACGACAAGATCCTCTGCATGCACGGCGGCCTTTCCCCGGACATGGACAGCCTCGACCAAATCAAAGCCATAGAAAGGCCTGTCGACGTCCCCGACCAGGGTCTCTTGTGTGACCTCCTTTGGGCCGATCCTGACTCCGACATACGAGGCTGGGGCGAGAACGACAGGGGCGTCTCTTACACCTTCGGCCCTGATAAGGTTGCCGAGTTCTTGAAGAAACACGATCTCGATCTCATTTGCAGGGCCCACCAAGTGGTCGAAGACGGTTACCAATTCTTCGCCGACAGGCAGCTCGTCACCATATTTTCAGCCCCCAACTATTGCGGCGAGTTCAACAACGCCGGCGCCCTCATGTGCGTCGACGAAACTTTGCTCTGCTCCTTTCAGATCATCAAACCCATGGGCTTGCGAGGAAAATTCACATGA 903 0.5238 MEGLDGFIERLLEVRKNRGKRIQLVESEIRNLCSTAKDLLLSQPNLLELEAPINVCGDIHGQYPDLLRLFEYGGFPPDSNYLFLGDYVDRGKQSVETICLLLAYKIKFPENFFLLRGNHECASINRIYGFYDECKRRFSVRLWKIFTDCFNCLPVAAVIDDKILCMHGGLSPDMDSLDQIKAIERPVDVPDQGLLCDLLWADPDSDIRGWGENDRGVSYTFGPDKVAEFLKKHDLDLICRAHQVVEDGYQFFADRQLVTIFSAPNYCGEFNNAGALMCVDETLLCSFQIIKPMGLRGKFT 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium15216g00002 300 ProSitePatterns Serine/threonine specific protein phosphatases signature. 115 120 IPR006186 GO:0016787
Vium15216g00002 300 Pfam Calcineurin-like phosphoesterase 52 244 IPR004843 GO:0016787
Vium15216g00002 300 SUPERFAMILY Metallo-dependent phosphatases 20 294 IPR029052 -
Vium15216g00002 300 SMART pp2a_7 24 294 IPR006186 GO:0016787
Vium15216g00002 300 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 8 293 - -
Vium15216g00002 300 PRINTS Serine/threonine phosphatase family signature 256 272 IPR006186 GO:0016787
Vium15216g00002 300 PRINTS Serine/threonine phosphatase family signature 81 108 IPR006186 GO:0016787
Vium15216g00002 300 PRINTS Serine/threonine phosphatase family signature 114 138 IPR006186 GO:0016787
Vium15216g00002 300 PRINTS Serine/threonine phosphatase family signature 148 174 IPR006186 GO:0016787
Vium15216g00002 300 PRINTS Serine/threonine phosphatase family signature 234 254 IPR006186 GO:0016787
Vium15216g00002 300 PRINTS Serine/threonine phosphatase family signature 52 79 IPR006186 GO:0016787
Vium15216g00002 300 PRINTS Serine/threonine phosphatase family signature 177 204 IPR006186 GO:0016787
Vium15216g00002 300 Pfam Serine-threonine protein phosphatase N-terminal domain 4 50 IPR031675 -
Vium15216g00002 300 Gene3D - 2 299 IPR029052 -
Vium15216g00002 300 CDD MPP_PP1_PPKL 4 292 - -
Vium15216g00002 300 FunFam Serine/threonine-protein phosphatase 2 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium15216g00002 Vium-Chr15216 6919 8594 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium15216g00002 31 240 Calmodulin-binding Proteins AT5G63870 32.271 5.26e-31 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium15216g00002 K06269 - gmx:100804212 588.956