Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1520g00002 ATGGATAGAAGATACTGTTACAAGGATTTGCTTCCTCTGATCGTTCTTGTTGCAAATGAATGCAATAACACAGCTTTGTTCACTCTCTTCAAAGCAGCCACTCTGCAAGGGATGAGTAGCTATGTCTTTGTCTCCTATGCCTATTCCTTGGCCTTTCTTGTTCTTCTTCCTATTACTTTTCTCTACAGAAGATTAAGAGTGGTTCCTCCTCTCAGCTTTTCCATCCTATCCAAAATTGCTCTTCTGGGTCTCATAGGGTGTTCATCTCAGATTCTGGGGTATGTTGGGATCAGTTATAGTTCTCCCACACTTTCCTCTGCAATCAGCAACCTCACTCCTGCCTTCACCTTCGTACTTGCTGTCATTTGCAGGATGGAAAAGATAGTCATAAGAAGTAGAACTACCCAAGCTAAGATTTGGGGCAGCATTATATCGATATCAGGTGCATTTATTGTGACTTTCTACAAAGGTCAATCGATCATCATCGCTGATAATTCCCCTTCAATTCAACTTTCACAATCAAATGGCATTCTTGCTTCAGTAGACACAAATTGGACCTTTGGTGGTCTTCTGCTGACAGCTTGCAATATACTGCTTACTATATGGTTTATTTTACAGGTTGAAATCTTGAAGGAGTTCCCGGATGAACTAACTATGGTGTTCTTTTACAACTTGTATGCAGCCATTGTAGCTTCAATTGTAGGTTTAATTGGGGAGAAAAATTCAAGTGCGTGGAAAATAAGACCAGACATATCCCTGATCTCTATTGTTTGCACTGGAATATTTAACAAGTTCTTGAGTAGTGCAATATATGCCTGGGGAATACACCTAAAGGGGCCTGTATATGTAGCTATGTTCAAGCCTCTCTCAATTGTTATTGCAGTTGCCATGGGTGTTATGTTCCTTGGTGATACTCTGTATATTGGAAGTTTGATTGGAGGCACAGTAATATCAATTGGGTTTTATACTGTGATGTGGGGCAAAGCAACTGAACAGAAGGAAGAGGAGGAAGATGTTGGTAGCCAAGAATCACCAATCACTGAGAATGTTCCTCTCTTGCAAAGCTATGCAACTGTAAATTCTACAAAGAAAATAGATGCAAGAGTATAA 1110 0.4009 MDRRYCYKDLLPLIVLVANECNNTALFTLFKAATLQGMSSYVFVSYAYSLAFLVLLPITFLYRRLRVVPPLSFSILSKIALLGLIGCSSQILGYVGISYSSPTLSSAISNLTPAFTFVLAVICRMEKIVIRSRTTQAKIWGSIISISGAFIVTFYKGQSIIIADNSPSIQLSQSNGILASVDTNWTFGGLLLTACNILLTIWFILQVEILKEFPDELTMVFFYNLYAAIVASIVGLIGEKNSSAWKIRPDISLISIVCTGIFNKFLSSAIYAWGIHLKGPVYVAMFKPLSIVIAVAMGVMFLGDTLYIGSLIGGTVISIGFYTVMWGKATEQKEEEEDVGSQESPITENVPLLQSYATVNSTKKIDARV 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1520g00002 369 PANTHER WAT1-RELATED PROTEIN 11 336 IPR030184 GO:0016020|GO:0022857
Vium1520g00002 369 SUPERFAMILY Multidrug resistance efflux transporter EmrE 49 156 - -
Vium1520g00002 369 Pfam EamA-like transporter family 26 153 IPR000620 GO:0016020
Vium1520g00002 369 Pfam EamA-like transporter family 188 325 IPR000620 GO:0016020
Vium1520g00002 369 SUPERFAMILY Multidrug resistance efflux transporter EmrE 232 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1520g00002 Vium-Chr1520 8563 12895 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1520g00002 1 356 Nodulin-like Gene Family AT3G28050 50.681 8.35e-121 352
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1520g00002 - - gmx:100791805 646.736