Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1520g00001 ATGGCAAGAGAACGGTCCTTTTACAGAGATTTTCTGCCAATTTTGGTGCTTCTAGGCACTGAATTCAATGACATGGGTTTACTCACACTCTTCAAAGTAGCCTCACTGCAAGGATTGAACAGCTATGTCTTTGTGGCCTATGCTTATGCTGTTGCAACCACTGTGCTTCTTCCTGTCACTTTTTTCCACAGAAGATCAAGGGTGGTTCCTCCACTCAGTTTCTCCACAGTATCCAAAATAGTTCTTCTTGGGGTGATAGGAAGTTCATCTCAGATACTGGGTTATGCAGGAATCAGCTATAGTTCTCCAGCTCTTGCTTCATCAATTGGCAATCTGGTGCCTGCTTTAACCTTTATCCTTGCCGTAATCTGCAGGATGGAAAAGTTAGCTGCTAAAAGTAGGAGTAGTCAAGCTAAGGTAATGGGAAGCATAATATCAATATCAGGTGCATTTGTTCTGACTTTCTACAAAGGACCATCAATCGTCAATGCTCACAAACATCTTTCCTTGTCACTTCAAGATCAAATTAACTTTCTTAAATCAGAGGATGCTAGCTGGGCCACTGGTGGCATTCTGCTGATAGCTGACTACATTCTGACTTCAGTATGGTACATTTTAGAGGAGGATATCTTGAGAGTGTTCCCGGATGAACTTACTCTAGTCTTGCTTTACAATGTCACTGCCACAATATTCACTGCAAATGTAGGTTTATTTGCTGAGCCAAGTGCTAGTGCTTGGAAAATAGGTCTAAATGTTTCACTGATCTCCATTGTTAGCTCAGGACTATTTGGAAAGTTAATGAGCAATGTAGTTTATGCCTGGACATTGAATTTAAAGGGGGCTGTCTTTGTAACATCCTTCAGGCCACTTCAAATTGTGATTGCAGTTGCAATGGGTGTTTTGTTCCTTGATGATACTCTGTACATTGGAAGCGTAGTTGGAGCCATAATAGTATCGATTGGCCTTTATGTTGTGTTGTGGGGCAAGGCAACAGAAGAGATTGAGGAAGTTGTTGGTGGCTTGGAATCACTAACTGCTGAGAATGTTCCTCTCTTGCAAAACCAGAGAACTGAAACATCAGAAAAGAATGTTTAA 1095 0.4137 MARERSFYRDFLPILVLLGTEFNDMGLLTLFKVASLQGLNSYVFVAYAYAVATTVLLPVTFFHRRSRVVPPLSFSTVSKIVLLGVIGSSSQILGYAGISYSSPALASSIGNLVPALTFILAVICRMEKLAAKSRSSQAKVMGSIISISGAFVLTFYKGPSIVNAHKHLSLSLQDQINFLKSEDASWATGGILLIADYILTSVWYILEEDILRVFPDELTLVLLYNVTATIFTANVGLFAEPSASAWKIGLNVSLISIVSSGLFGKLMSNVVYAWTLNLKGAVFVTSFRPLQIVIAVAMGVLFLDDTLYIGSVVGAIIVSIGLYVVLWGKATEEIEEVVGGLESLTAENVPLLQNQRTETSEKNV 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1520g00001 364 PANTHER WAT1-RELATED PROTEIN 13 342 IPR030184 GO:0016020|GO:0022857
Vium1520g00001 364 SUPERFAMILY Multidrug resistance efflux transporter EmrE 243 329 - -
Vium1520g00001 364 Pfam EamA-like transporter family 25 154 IPR000620 GO:0016020
Vium1520g00001 364 SUPERFAMILY Multidrug resistance efflux transporter EmrE 49 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1520g00001 Vium-Chr1520 470 3608 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1520g00001 1 332 Nodulin-like Gene Family AT3G28050 48.048 5.29e-105 311
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1520g00001 - - gmx:100790743 546.199