Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium15201g00002 ATGCCTCGTTTTGGTAAGTTTGTGGAGATTCAGTTTGATCAAAAGGGGAGAATTTCAGGAGCTGCTATCAGAACATATTTGCTGGAACGATCCCGTGTTTGTCAAGTTTCTGATCCTGAGAGAAACTATCATTGCTTTTATATGCTGTGTGCTGCACCAAAAGAGGAATCTGGTAAGTACAAATTGGGAGATCCAAGAAAATTCCATTACCTTAATCAATCAAATTGCATTGAGTTGGATGGGTTGGATGATTCTAAGGAGTACCTTGCAACTAGGAGAGCTATGGAGGTTGTTGGGATCAGCGGAGATGAGCAGGATGCTATATTTCGAATAGTAGCTGCAGTACTTCATTTAGGAAACATTGAGTTTATTAAGGGTTCGGAAGATGAGTTGGATTCCTCTCAGCCCAAGGATGAAAAATCCATTTACCACCTAAAAACAGCAGCCGAGCTTTTGATGTGTGACGAGAAGTCCCTTGAAGACTCTTTCTGCAAACGTGTTATGGTGACTCGTGGTGACACCATAACAAAATCACTTGATCCAACTGCTGCAGCCCTCAGCAGAGATGCATTGGCTAAAATAGTTTATTCAAGGCTTTTTGACTGGATTGTGTGCAAGATAAACAACACTATTGGGCAAGATCCAGATTCAACTAAATTGATTGGAGTTCTTGATATATATGGATTTGAGAGTTTCAAAACCAACAGCTTTGAGCAATTTTGTATCAATTTAACAAATGAGAAATTACAGCAGCATTTCAACCAGCACGTCTTCAAGATGGAGCAAGAGGAGTATACAAATGAAGAGATTAATTGGAGTTATATTGAGTTCGTGGATAATCAAGATGTTATTGATCTCATAGAGAAGAAACCTGGTGGTGTTATTGCTCTCCTGGATGAGGCCTGTATGTTTCCAAGATCAACGCATGAAACATTTGCTGAAAAGCTGTATCAAACCTTCAAAGACAACAAACGCTTCAACAAGCCAAAGTTCTCTCGCACTGACTTCACCATTAAGCATTATGCTGGTGATGTCACTTATCAAACTGATTTTTTCCTTGATAAAAATAAAGACTACGTTGTTCCAGAGCATGCTGCTCTACTCAGTGCTTCGAAGTGCCCTTTTGTTTCAGGGTTGTTCCCTCCTTTACCCGAGGAAACTACAAAATCGACAAAGTTCTCTTCTATAGCCACTCAGTTTAAGCTACAACTGCAATCTTTGCTTGAAACACTAAACGCTACCGAGCCTCACTATATTCGTTGTGTAAAGCCA 1272 0.4002 MPRFGKFVEIQFDQKGRISGAAIRTYLLERSRVCQVSDPERNYHCFYMLCAAPKEESGKYKLGDPRKFHYLNQSNCIELDGLDDSKEYLATRRAMEVVGISGDEQDAIFRIVAAVLHLGNIEFIKGSEDELDSSQPKDEKSIYHLKTAAELLMCDEKSLEDSFCKRVMVTRGDTITKSLDPTAAALSRDALAKIVYSRLFDWIVCKINNTIGQDPDSTKLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYTNEEINWSYIEFVDNQDVIDLIEKKPGGVIALLDEACMFPRSTHETFAEKLYQTFKDNKRFNKPKFSRTDFTIKHYAGDVTYQTDFFLDKNKDYVVPEHAALLSASKCPFVSGLFPPLPEETTKSTKFSSIATQFKLQLQSLLETLNATEPHYIRCVKP 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium15201g00002 424 SMART MYSc_2a 1 424 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vium15201g00002 424 PANTHER MYOSIN 3 424 - -
Vium15201g00002 424 FunFam Myosin 2 101 216 - -
Vium15201g00002 424 FunFam Class V myosin 230 367 - -
Vium15201g00002 424 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 424 IPR027417 -
Vium15201g00002 424 Gene3D - 237 414 - -
Vium15201g00002 424 ProSiteProfiles Myosin motor domain profile. 1 424 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vium15201g00002 424 Gene3D - 41 99 - -
Vium15201g00002 424 Gene3D Myosin VI head, motor domain, U50 subdomain 102 236 - -
Vium15201g00002 424 PRINTS Myosin heavy chain signature 273 301 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vium15201g00002 424 PRINTS Myosin heavy chain signature 220 248 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vium15201g00002 424 FunFam Myosin heavy chain 41 96 - -
Vium15201g00002 424 Pfam Myosin head (motor domain) 3 424 IPR001609 GO:0003774|GO:0005524|GO:0016459
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium15201g00002 Vium-Chr15201 8768 12027 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium15201g00002 3 424 Myosins gene family AT1G04600 81.043 0.0 727
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium15201g00002 K10357 - vum:124822995 862.448