Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium15201g00001 ATGGTTGTGAGCAAATCCGCTAACATGTATCCCAAAGATCCAGAATTCCCACCTGCTGGTGTGGAAGATATGACAAGACTGGCATATCTGCATGAACCAGGAGTTCTTCAGAATTTGCATATTCGATATTCCCTAAATGATATCTAGTATAGTTACACAGGAAATATATTGATAGCTGTGAACCCTTTTCAAAGGTTACCTCATTTGACTGAAACTAGTACCATGGCAAAGTATAAAGCTGCGGCTTTTGGTGAGCAGAGCCCGCATCCTTTTGCAATTGCAAGTTCTGCATATAGAAAGATGATAAACGAAGAAAAAAGCCAATATTTGGTTAGTGGAGAAAGTGGAGCTGGCAAGACAGAGAGTACAAAGATGCTTATGCATTATCTTGCTTTTTTGGGAGGGAGAGCAGCAACTGAAGGACGGTCTGTGGAGCAACAAGTTCTCGAGTCCAATCCAGTTTTAGAAGCATTTGGCAACGCAAAGACAGTTAGGAATAATAATTCTGAGTATAATTTCAGTCGTTTTGGTAAGTTTGTGGAGATTCAGTTTGATCAAAAGGGGAGAATTTCAGGAGCTGCTATCAGAACATATTTGCTGGAACGATCCCGTGTTTGTCAAGTTTCTGATCCTGAGAGAAACTATCATTGCTTTTATATGCTGTGTGCTGCACCAAAAGAGGAATCTGGTAAGTACAAATTGGGAGATCCAAGAAAATTCCATTACCTTAATCAATCAAATTGCATTGAGTTGGATGGGTTGGATGATTCTAAGGAGTACCTTGCAACTAGGAGAGCTATGGAGGTTGTTGGGATCAGCGGAGATGAGCAGGATGCTATATTTCGAATAGTAGCTGCAGTACTTCATTTAGGAAACATTGATTTTGTTAAGGGAGTGGAAGAGGTGTTTGATTCCTGTCAGCCCAAGGATGAAAAATCCATTTACCACCTAAAAACAGCAGCCGAGCTTTTGATGTGTGACGAGAAGTCCCTTGAAGACTCTTTCTGCAAACGTGTTATGGTGACTCGTGGTGACACCATAACAAAATCACTTGATCCAACTGCTGCAGCCCTCAGCAGAGATGCATTGGCTAAAATAGTTTATTCAAGGCTTTTTGACTGGATTGTGTGCAAGATAAACAACACTATTGGGCAAGATCCAAAGTCAAATAGTTTGATTGGAGTTCTAGATATATATGGATTTGAGAGTTTCAAAACCAACAGCTTTGAGCAATTTTGTATCAATTTAACAAATGAGAAATTACAGCAGCATTTCAACCAGCACGTCTTCAAGATGGAGCAAGAGGAGTATACAAAAGAAGAGATTAATTGGAGTTATATTGAGTTCGTTGATAATCAAGATGTTCTTGATCTCATAGAGAAGAAACCTGGTGGTGTTATTGCTCTCCTGGATGAGGCCTGTATGTTTCCAAGATCAACGCATGAAACATTTGCTGAAAAGCTATACCAAACCTTTAAAGACAACAAACGCTTCAGCAAGCCAAAGTTGTCTCGCACAGACTTTACCATTAACCACTATGCTGGTGATGTCACTTATCAAACTGATTTTTTCCTTGATAAAAATAAAGACTACGTTGTTCCAGAGCATGCTGCTCTACTCAGTGCTTCGAAGTGCCCTTTTGTTTCAGGGTTGTTCCCTCCTTTACCCGAGGAAACTACAAAATCGACAAAGTTCTCTTCTATAGCCACTCAGTTTAAGCTACAACTGCAATCTTTGCTTGAAACACTAAACGCTACCGAGCCTCACTATATTCGTTGTGTAAAGCCAAATAATCTTCTCAAGCCTGGGATATTCGAGAACAATAATGTGTTGCAGCAGCTTCGGTGTGGAGGAGTAATGGAGGCAATTCGGATAAGTTGTGCTGGATATCCCACTAGAAAGTCCTTTGATGAATTTGTTCAGCGGTTTACCATCCTGGAACCTTCAGTTCTGAAAGCATGCCCTGATGAGGTGACGGCTTGCAAGAGGCTTCTAGATAGAGCGAACCTTAAAGACTATCAGATTGGAAAGACAAAAGTGTTTCTAAGAGCAGGTCAAATGGCAGAACTAGATGCATGTCGTGCTGAGGTCCTAGGATTGTCTGCAAGTGTTATTCAGAGAAAAGTCCGCACGTTTCTCTGTCGGAAACAATACGTCTCATTGCAGTTGTCGGCCATAGAACTTCAAAGGGTTGCGAAAGGACAACTTGCACGACGTCAGTATGAATGCATGAGGAGGGAAGCCGCTTCTATAAAACTTCAGAAAGATTTCCGCATGTATATTTCCAGAAAGTCTTACAAAACTAAATATGCCTCAGCGATTTGTATTCAAACTGGTATGCGAGGGATGGCTGCTAGAAATGATCTTAGCTTTAGGAGACGGACAAAAGCTGCAATTATCATTCAGGCTCGGCAAAGATGTCATTCGGCTCGTACTTATCACCTGAAGCTAAAGAAAGCAGCAATTTTTGCACAGTGTTCCTGGAGGAGAACAATAGCACGGAGAGAACTTCGAAAGCTTAAAATGGTGCTCCCTCTTCCCTCTTGA 2547 0.4122 MVVSKSANMYPKDPEFPPAGVEDMTRLAYLHEPGVLQNLHIRYSLNDIXYSYTGNILIAVNPFQRLPHLTETSTMAKYKAAAFGEQSPHPFAIASSAYRKMINEEKSQSXLVSGESGAGKTESTKMLMHYLAFLGGRAATEGRSVEQQVLESNPVLEAFGNAKTVRNNNSEYNFSRFGKFVEIQFDQKGRISGAAIRTYLLERSRVCQVSDPERNYHCFYMLCAAPKEESGKYKLGDPRKFHYLNQSNCIELDGLDDSKEYLATRRAMEVVGISGDEQDAIFRIVAAVLHLGNIDFVKGVEEVFDSCQPKDEKSIYHLKTAAELLMCDEKSLEDSFCKRVMVTRGDTITKSLDPTAAALSRDALAKIVYSRLFDWIVCKINNTIGQDPKSNSLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYTKEEINWSYIEFVDNQDVLDLIEKKPGGVIALLDEACMFPRSTHETFAEKLYQTFKDNKRFSKPKLSRTDFTINHYAGDVTYQTDFFLDKNKDYVVPEHAALLSASKCPFVSGLFPPLPEETTKSTKFSSIATQFKLQLQSLLETLNATEPHYIRCVKPNNLLKPGIFENNNVLQQLRCGGVMEAIRISCAGYPTRKSFDEFVQRFTILEPSVLKACPDEVTACKRLLDRANLKDYQIGKTKVFLRAGQMAELDACRAEVLGLSASVIQRKVRTFLCRKQYVSLQLSAIELQRVAKGQLARRQYECMRREAASIKLQKDFRMYISRKSYKTKYASAICIQTGMRGMAARNDLSFRRRTKAAIIIQARQRCHSARTYHLKLKKAAIFAQCSWRRTIARRELRKLKMVLPLPS 849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium15201g00001 849 ProSiteProfiles IQ motif profile. 722 751 IPR000048 GO:0005515
Vium15201g00001 849 Gene3D - 214 272 - -
Vium15201g00001 849 Gene3D - 403 587 - -
Vium15201g00001 849 FunFam Class V myosin 403 540 - -
Vium15201g00001 849 Pfam IQ calmodulin-binding motif 725 742 IPR000048 GO:0005515
Vium15201g00001 849 Pfam IQ calmodulin-binding motif 796 815 IPR000048 GO:0005515
Vium15201g00001 849 Pfam IQ calmodulin-binding motif 702 719 IPR000048 GO:0005515
Vium15201g00001 849 Pfam IQ calmodulin-binding motif 749 768 IPR000048 GO:0005515
Vium15201g00001 849 Pfam Myosin head (motor domain) 21 684 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vium15201g00001 849 FunFam unconventional myosin-Va 749 797 - -
Vium15201g00001 849 ProSiteProfiles Myosin motor domain profile. 19 696 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vium15201g00001 849 Gene3D Kinesin motor domain 22 626 IPR036961 -
Vium15201g00001 849 ProSiteProfiles IQ motif profile. 795 821 IPR000048 GO:0005515
Vium15201g00001 849 FunFam Myosin 2 274 391 - -
Vium15201g00001 849 PANTHER MYOSIN 11 812 - -
Vium15201g00001 849 PRINTS Myosin heavy chain signature 446 474 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vium15201g00001 849 PRINTS Myosin heavy chain signature 154 181 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vium15201g00001 849 PRINTS Myosin heavy chain signature 107 132 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vium15201g00001 849 PRINTS Myosin heavy chain signature 50 69 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vium15201g00001 849 PRINTS Myosin heavy chain signature 393 421 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vium15201g00001 849 Gene3D - 631 694 - -
Vium15201g00001 849 ProSiteProfiles IQ motif profile. 747 773 IPR000048 GO:0005515
Vium15201g00001 849 FunFam unconventional myosin-Va 798 844 - -
Vium15201g00001 849 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 750 844 IPR027417 -
Vium15201g00001 849 CDD MYSc_Myo11 33 684 IPR036018 -
Vium15201g00001 849 Gene3D - 797 844 - -
Vium15201g00001 849 Gene3D - 749 796 - -
Vium15201g00001 849 Gene3D - 700 748 - -
Vium15201g00001 849 ProSiteProfiles IQ motif profile. 770 799 IPR000048 GO:0005515
Vium15201g00001 849 Gene3D Myosin VI head, motor domain, U50 subdomain 274 565 - -
Vium15201g00001 849 FunFam Myosin heavy chain 214 269 - -
Vium15201g00001 849 ProSiteProfiles IQ motif profile. 818 846 IPR000048 GO:0005515
Vium15201g00001 849 SMART MYSc_2a 13 697 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vium15201g00001 849 SMART iq_5 794 816 IPR000048 GO:0005515
Vium15201g00001 849 SMART iq_5 817 839 IPR000048 GO:0005515
Vium15201g00001 849 SMART iq_5 698 720 IPR000048 GO:0005515
Vium15201g00001 849 SMART iq_5 769 791 IPR000048 GO:0005515
Vium15201g00001 849 SMART iq_5 746 768 IPR000048 GO:0005515
Vium15201g00001 849 SMART iq_5 721 743 IPR000048 GO:0005515
Vium15201g00001 849 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 751 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium15201g00001 Vium-Chr15201 1934 8231 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium15201g00001 2 843 Myosins gene family AT5G43900 73.397 0.0 1308
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium15201g00001 K10357 - gmx:100788123 1503.42