Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1519g00033 ATGGAGTCTTTTGAGCCCAACGTAGATTCAAGTAATTCAGAAACGATGCGAGAATCTAATCAAAAGAAGCGCAGGAAAATCGGAGACCACGCCGCCGATCACAATTCCGCCAACGCTGTCCCTTGGAGATCCGAGGCGGAGCAACGGATCTACTCTCGCCGCCTCGTCGAGGCTCTCCGCCGGACTCCATCATCGGTTGCCAGGCCTGCGGCCGCCGGCCAGGTCCGCGAGACCGCAGACCGAATTCTCGCTGCCACCGCCAGAGGCCGAACGCGGTGGAGTCGCGCGATTCTGGGCCGGTGGAGGAAGCTTCGCACGCAGCACAAGAAGGCGAAGAAGACATCGTCCACCGGATTGAAGAGAGCGAGGATCAACAGCGGAGAGAGGAGGAACCGGTTACCGGCTGTGCAGAAGAAAGCGCGCGTTCTCAGCCGGTTGGTTCCCGGTTGCCGGAAGGTCTCGTTCCCAAACCTTCTGGAAGAAGCCACGGACTATATCTCCGCCTTGGAGATGCAAGTGCGAACCATGACGGCTCTAGCAGAATTACTCTCCGGGGGTGCTCCGGCTGGTATAGACGGTGGCGCGTTGAGTTGA 594 0.5926 MESFEPNVDSSNSETMRESNQKKRRKIGDHAADHNSANAVPWRSEAEQRIYSRRLVEALRRTPSSVARPAAAGQVRETADRILAATARGRTRWSRAILGRWRKLRTQHKKAKKTSSTGLKRARINSGERRNRLPAVQKKARVLSRLVPGCRKVSFPNLLEEATDYISALEMQVRTMTALAELLSGGAPAGIDGGALS 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1519g00033 197 MobiDBLite consensus disorder prediction 1 42 - -
Vium1519g00033 197 PANTHER TRANSCRIPTION FACTOR IBH1-LIKE 1 43 183 IPR044660 GO:0006355
Vium1519g00033 197 MobiDBLite consensus disorder prediction 1 15 - -
Vium1519g00033 197 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 120 169 IPR011598 GO:0046983
Vium1519g00033 197 MobiDBLite consensus disorder prediction 16 32 - -
Vium1519g00033 197 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 130 185 IPR036638 GO:0046983
Vium1519g00033 197 CDD bHLH_AtIBH1_like 128 180 IPR044549 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1519g00033 Vium-Chr1519 232508 233409 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1519g00033 1 176 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09250 41.667 1.33e-37 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1519g00033 - - gmx:100783462 316.235