Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1519g00032 ATGGAGAAGAAAGAGGAGATAATACTTCCATTGCCATCCGAGACCCATCTCAAGGACCTTCCCAATGTTTCCTCCACCTCAAGGCCTGTTGGGTCCCACAAAGGGCACTGTTCTCCGGGTGATGACTCCGACAGCTTCTATGATAAACTCGTTGAGTTGTTGGAGTCTTCTGGACTCACTCTCATTTTCAATGTTCGAGAAACATTGCTGGACTTGTACCTGTTTTACTTGGAGGTGACAAGAAGAGGAGGATATCAACAGGTTGGTCGAGAAAGGAAGTGGGGTGAAGTTGTGATTGCCCTGAAATTGGAAGGGAATAGTGTGAAGTTATCTGCTCAAGTTGAAAGGCTTTACTCACATCTTCTCTACCAGTTTGAGCAATTGTACTTCTACAGGCGTCCTGAAAAGCTAGCTTTCCGATCTGCCAGCAACAAAGAAGAAGGTCCGCTTAGGAAGAAGAGGATTTCAACAGTGAGTTTGGCTCCTAAGATGGATAGTAAAGATGATCAGAAGGCCACAGAAATGTCCAAGCAATACTCTTGCCACATGACAGCTGGGGCTGGGTATGTGCAACAGCCTGTGCTTTTACCAACACCTCCGAAAGAAAAGAAGAAACGCCGAGGTGCCCCGGTGGGACGAAAGACTGCATATCAGATATTCCTCAAGCATGAATGTGCTCGGTTGAAAACTTGCAATGAGGTCTTGGATGGAAAAATACTGAGTATGGCTATTCATTCATGGAGGACCATGTCTGAAACTGAGAAACAGCCATATGTGGAGGAAAGCAAGAAGAACAAAGAACAAATTAAGGAAGCAATGGTTAGACGCAATAAACAGCAGAGCAGCCAAGAGACCAGGGAAGAGAAGTGGTCTAGTATTTGTGGTGATTACCATGTAACACTGCAACCTGAAGCAGATGTAGCTCTTAAAATGACTGAAAAAGCACCAATGGATCCTCCATTTCAGATGGATTGGGATGGAAATTGTTCACTTGATTTTGCAACAAGGGAATCCGAGTAA 1020 0.4471 MEKKEEIILPLPSETHLKDLPNVSSTSRPVGSHKGHCSPGDDSDSFYDKLVELLESSGLTLIFNVRETLLDLYLFYLEVTRRGGYQQVGRERKWGEVVIALKLEGNSVKLSAQVERLYSHLLYQFEQLYFYRRPEKLAFRSASNKEEGPLRKKRISTVSLAPKMDSKDDQKATEMSKQYSCHMTAGAGYVQQPVLLPTPPKEKKKRRGAPVGRKTAYQIFLKHECARLKTCNEVLDGKILSMAIHSWRTMSETEKQPYVEESKKNKEQIKEAMVRRNKQQSSQETREEKWSSICGDYHVTLQPEADVALKMTEKAPMDPPFQMDWDGNCSLDFATRESE 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1519g00032 339 Gene3D - 33 148 IPR036431 GO:0003677
Vium1519g00032 339 ProSiteProfiles ARID domain profile. 40 130 IPR001606 GO:0003677
Vium1519g00032 339 Pfam ARID/BRIGHT DNA binding domain 43 126 IPR001606 GO:0003677
Vium1519g00032 339 SMART hmgende2 209 278 IPR009071 -
Vium1519g00032 339 SUPERFAMILY ARID-like 42 136 IPR036431 GO:0003677
Vium1519g00032 339 Coils Coil 259 279 - -
Vium1519g00032 339 SMART ARID_2 37 126 - -
Vium1519g00032 339 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 178 288 - -
Vium1519g00032 339 CDD HMG-box_SF 214 268 - -
Vium1519g00032 339 Gene3D High mobility group box domain 198 294 IPR036910 -
Vium1519g00032 339 SUPERFAMILY HMG-box 193 273 IPR036910 -
Vium1519g00032 339 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 210 277 IPR009071 -
Vium1519g00032 339 SMART bright_3 41 131 IPR001606 GO:0003677
Vium1519g00032 339 MobiDBLite consensus disorder prediction 20 41 - -
Vium1519g00032 339 Pfam HMG-box domain 212 274 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1519g00032 Vium-Chr1519 218339 220922 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1519g00032 42 285 ARID Transcription Factor Family AT3G13350 24.265 1.67e-13 68.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Vium1519g00032 ARID 8e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1519g00032 - - var:108325455 666.381