Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1519g00031 ATGGAGAAGAAAGAGGAGATAATACTTCCATTGCCATCCGAGACCCATCTCAAGGACCTTCCCAATGTTTCCTCCACCTCAAGGCCTGTTGGGTCCCACAAAGGGCACTGTTCTCCGGGTGATGACTCCGACAGCTTCTATGATAAACTCGTTGAGTTGTTGGAGTCTTCTGGACTCACTCTCATTTTCAATGTTCGAGAAACATTGCTGGACTTGTACCTGTTTTACTTGGAGGTGACAAGAAGAGGAGGATATCAACAGGTTGGTCGAGAAAGGAAGTGGGGTGAAGTTGTGATTGCCCTGAAATTGGAAGGGAATAGTGTGAAGTTATCTGCTCAAGTTGAAAGGCTTTACTCACATCTTCTCTACCAGTTTGAGCAATTGTACTTCTACAGGCGTCCTGAAAAGCTAGCTTTCCGATCTGCCAGCAACAAAGAAGGTCCGCTTAGGAAGAAGAGGATTTCAACAGTGAGTTTGGCTCCTAAGATGGATAGTAAAGATGATCAGAAGGCCACAGAAATGTCCAAGCAATACTCTTGCCACATGACAGCTGGGGCTGGGTATGTGCAACAGCCTGTGCTTTTACCAACACCTCCGAAAGAAAAGAAGAAACGCCGAGGTGCCCCGGTGGGACGAAAGACTGCATATCAGATATTCCTCAAGCATGAATGTGCTCGGTTGAAAACTTGCAATGAGGTCTTGGATGGAAAAATACTGAGTATGGCTATTCATTCATGGAGGACCATGTCTGAAACTGAGAAACAGCCATATGTGGAGGAAAGCAAGAAGAACAAAGAACAAATTAAGGAAGCAATGGTTAGACGCAATAAACAGCAGAGCAGCCAAGAGACCAGGGAAGAGAAGTGGTCTAGTATTTGTGGTGATTACCATGTAACACTGCAACCTGAAGCAGATGTAGCTCTTAAAATGACTGAAAAAGCACCAATGGATCCTCCATTTCAGATGGATTGGGATGGAAATTGTTCACTTGATTTTGCAACAAGGGAATCCGAGTAA 1017 0.4474 MEKKEEIILPLPSETHLKDLPNVSSTSRPVGSHKGHCSPGDDSDSFYDKLVELLESSGLTLIFNVRETLLDLYLFYLEVTRRGGYQQVGRERKWGEVVIALKLEGNSVKLSAQVERLYSHLLYQFEQLYFYRRPEKLAFRSASNKEGPLRKKRISTVSLAPKMDSKDDQKATEMSKQYSCHMTAGAGYVQQPVLLPTPPKEKKKRRGAPVGRKTAYQIFLKHECARLKTCNEVLDGKILSMAIHSWRTMSETEKQPYVEESKKNKEQIKEAMVRRNKQQSSQETREEKWSSICGDYHVTLQPEADVALKMTEKAPMDPPFQMDWDGNCSLDFATRESE 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1519g00031 338 Coils Coil 258 278 - -
Vium1519g00031 338 ProSiteProfiles ARID domain profile. 40 130 IPR001606 GO:0003677
Vium1519g00031 338 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 26 287 - -
Vium1519g00031 338 Pfam ARID/BRIGHT DNA binding domain 43 126 IPR001606 GO:0003677
Vium1519g00031 338 SUPERFAMILY ARID-like 42 136 IPR036431 GO:0003677
Vium1519g00031 338 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 209 276 IPR009071 -
Vium1519g00031 338 SMART ARID_2 37 126 - -
Vium1519g00031 338 SUPERFAMILY HMG-box 192 272 IPR036910 -
Vium1519g00031 338 Gene3D High mobility group box domain 197 293 IPR036910 -
Vium1519g00031 338 CDD HMG-box_SF 213 267 - -
Vium1519g00031 338 SMART hmgende2 208 277 IPR009071 -
Vium1519g00031 338 SMART bright_3 41 131 IPR001606 GO:0003677
Vium1519g00031 338 Pfam HMG-box domain 211 273 IPR009071 -
Vium1519g00031 338 MobiDBLite consensus disorder prediction 20 41 - -
Vium1519g00031 338 Gene3D - 33 147 IPR036431 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1519g00031 Vium-Chr1519 218335 220922 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1519g00031 42 284 ARID Transcription Factor Family AT3G13350 24.176 1.70e-13 68.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Vium1519g00031 ARID 8e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1519g00031 - - var:108325455 664.07