Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1519g00030 ATGGAGTTATTTACTAGAGAGATTATTCTTTCCATTGCTGTCATTGTTGTTTCTTCTTCGGAGATTAGTAGAGCAGTGGATTGTGGTGGCCCGCAAATTTCAAGCACAATCGTAGTTGGTAGCAGCTCATCAAATTTCACATCAATTCAAGATGCCATTGATTCAATACCGACAAAAAACTCCAAATGGGTAAAAGTTCAGATAAATGCTGGCACATATAAAGAGAGGGTTACCATCCCAGTGGATAAGCCATGCATCTATATGCAGGGCCAAGGGGCAGATGTTACCACCGTTACGAACGATGACCACTCGGCAACAAATACTAGTGCCACATTCACTTCCATTTCAAACAATGTTGTTGCATCAGATATTACTTTTCAGAACTCGTACGGTTTGGAAATGTTAGAAAATATGCTAATACATAAGATCAGTTTTGGAATAAGGATTCCATCGTTGGCTGCAAGAATAGCCGGAGACAAAAGTGCCTTTTATAATTGTAGTTTTGTTGGTTTTCAAGACACTGTTTGGGATGAATTAGGTCGTCATTATTTCAAAAATTGCATGATTGAAGGTGCTGTGGACTTCGTATTTGGTGATGGACAATCCTACTACCAGGATTGTGTGGTGAATTCGACTTCCTTGGGTTCCATAACAGCACAAGCACGCAATAAAAGTAGTGACCCATCTGGTTTTGTGTTTGAAGGAGGTTCTGTGATAGGTAACAGTAATGGAGACTCTTTATTAGGAAGAGGTTATGGTCATTGCTCTAGGGTTGTATTTTATAAAATGAACCTTAGTGGTGTCATCCGGCCTGTAGGATGGGATGCTTGGAAGTCCAAAGATGACGTGAGTTGTCTTTTCTTCTCTGAGATTCAATGTACAGGACCAGGTTCTGATACTTCTCAACGTGTTCCTTGGGAAAAGAATTTGACAGACACAGATTTTAACAACAAATTTTCAATTCCAGTGTTCATCAATCAAGATGACTGGCTCTCACAATTACCAATAGGGAAATAG 1017 0.3972 MELFTREIILSIAVIVVSSSEISRAVDCGGPQISSTIVVGSSSSNFTSIQDAIDSIPTKNSKWVKVQINAGTYKERVTIPVDKPCIYMQGQGADVTTVTNDDHSATNTSATFTSISNNVVASDITFQNSYGLEMLENMLIHKISFGIRIPSLAARIAGDKSAFYNCSFVGFQDTVWDELGRHYFKNCMIEGAVDFVFGDGQSYYQDCVVNSTSLGSITAQARNKSSDPSGFVFEGGSVIGNSNGDSLLGRGYGHCSRVVFYKMNLSGVIRPVGWDAWKSKDDVSCLFFSEIQCTGPGSDTSQRVPWEKNLTDTDFNNKFSIPVFINQDDWLSQLPIGK 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1519g00030 338 FunFam Pectinesterase 31 335 - -
Vium1519g00030 338 Pfam Pectinesterase 37 327 IPR000070 GO:0030599|GO:0042545
Vium1519g00030 338 SUPERFAMILY Pectin lyase-like 33 334 IPR011050 -
Vium1519g00030 338 ProSitePatterns Pectinesterase signature 2. 189 198 IPR033131 -
Vium1519g00030 338 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 34 332 - -
Vium1519g00030 338 Gene3D - 31 336 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1519g00030 Vium-Chr1519 212379 213972 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1519g00030 10 280 Carbohydrate Esterase AT2G19150 41.429 1.16e-69 217
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1519g00030 - - vun:114192590 502.671