Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1519g00024 ATGTTGCAATTCCCAAAAGCTTCGTCTTCTCGACTTACTGGATCTGTGGGCGTGGATAAGGCAGCAAAAGCAGATACTAAATCTTTTGATCGTGCAGGAAATTCTCCAGGATTGTACGATTTATCAAAAATTAGTGATCCTTTGAATCGGTTGCATGGTAGTTTTGTTCCTGAAGATGTTCCTGATGCTGCTTCTGAGAAAGATCTGGGTAATGAGTTTTTCAAGCAGAAGAAATTTAAGGAAGCTAGAGACTGCTATTCAAGGAGCATTGCCCTATCACCAACAGCTGTAGCATATGCAAATAGGGCAATGGCCAATATCAAGCTCAGAAGATTCCAAGAGGCTGAGGATGACTGCACAGAGGCCTTAGATCTTGATGATCGTTACATAAAAGCATATTCACGAAGAGCAACAGCTAGAAAAGAACTTGGGAAAATTAAAGAATCAATGGAAGATGCTGAGTTTGCTTTGAGGTTGGAACCAAACAATCAAGAAATCAAGAAACAGTATGCCGATGCTAAATCTTTGTATGAGAAAGATATTCTTCAGAAAGCATCAGGAGCTATGAGAAGCACTGTACAGGAAACTCGAAAAGTGGGAAAGTCAGAGGAAAAAGTTAACGGAGGTAGCATCCACCCCATTTCACATGGTACTCAAAAGTCCGGTCCAGCTGAAATTAATCATAAAAAGGTTAATGAGCAGCAAATACCTGTTAAAGAATCACTTATAACAGAGGAGGTCGATAGCAGAGACACAATAACCAGAAAAAGGCCTCAAGCACAAGGAGGTGATGATTCTAGGAAAGGTTTGAGTGCAAGTAACAGTTTGGAGCAGAGAAATCACAGAATTATTAAGCCCGAAATGAAAGCATCTGTTCAACAGCTTGCTTCTCGTGCTGCTTCTAGAGCCATGGCTGAAGCTGCTAAAAACATAACACCACCAACCACTGCGTACCAGTTTGAGGTCTCATGGAGATCATTTTCAGGTGATCTTGCTCTGCAGGCTCGTCTATTAAAGGCTATATCTCCCCGCGAATTACCGAAAATATTCAAAAATGCTTTATCTTCTACCGTACTTGTTGACATCATCAAGTGTCTCTCATCTTTTTTCACTGAGGACATGGATCTGGTTGTCAGTTATATGGAGTATTTGATCAAAGTTCCAAGATTTGACATGATTGTAATGTGCCTCTCATCAACAAATAAGGATGACATACGCAAGATCTGGGATGAAGTGTTCAAAAGTGAGGCAACACCAATTGAGTATGCAGAGATTCTAGACAACCTCCGATCAAAGTTCTGCCTTGGACAGTGA 1314 0.4087 MLQFPKASSSRLTGSVGVDKAAKADTKSFDRAGNSPGLYDLSKISDPLNRLHGSFVPEDVPDAASEKDLGNEFFKQKKFKEARDCYSRSIALSPTAVAYANRAMANIKLRRFQEAEDDCTEALDLDDRYIKAYSRRATARKELGKIKESMEDAEFALRLEPNNQEIKKQYADAKSLYEKDILQKASGAMRSTVQETRKVGKSEEKVNGGSIHPISHGTQKSGPAEINHKKVNEQQIPVKESLITEEVDSRDTITRKRPQAQGGDDSRKGLSASNSLEQRNHRIIKPEMKASVQQLASRAASRAMAEAAKNITPPTTAYQFEVSWRSFSGDLALQARLLKAISPRELPKIFKNALSSTVLVDIIKCLSSFFTEDMDLVVSYMEYLIKVPRFDMIVMCLSSTNKDDIRKIWDEVFKSEATPIEYAEILDNLRSKFCLGQ 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1519g00024 437 SMART tpr_5 63 96 IPR019734 GO:0005515
Vium1519g00024 437 SMART tpr_5 97 129 IPR019734 GO:0005515
Vium1519g00024 437 SMART tpr_5 130 163 IPR019734 GO:0005515
Vium1519g00024 437 MobiDBLite consensus disorder prediction 1 37 - -
Vium1519g00024 437 Pfam Tetratricopeptide repeat 98 126 IPR019734 GO:0005515
Vium1519g00024 437 PANTHER OS05G0129900 PROTEIN 21 436 - -
Vium1519g00024 437 MobiDBLite consensus disorder prediction 1 15 - -
Vium1519g00024 437 MobiDBLite consensus disorder prediction 188 284 - -
Vium1519g00024 437 SUPERFAMILY TPR-like 59 175 IPR011990 GO:0005515
Vium1519g00024 437 ProSiteProfiles TPR repeat profile. 63 96 IPR019734 GO:0005515
Vium1519g00024 437 Gene3D Tetratricopeptide repeat domain 56 161 IPR011990 GO:0005515
Vium1519g00024 437 ProSiteProfiles TPR repeat profile. 130 163 IPR019734 GO:0005515
Vium1519g00024 437 MobiDBLite consensus disorder prediction 243 263 - -
Vium1519g00024 437 Pfam Potential Monad-binding region of RPAP3 313 402 IPR025986 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1519g00024 Vium-Chr1519 173767 179202 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1519g00024 67 133 U-box Gene Family AT3G07370 39.706 1.21e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1519g00024 K23002 - gmx:100784528 707.983