Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1519g00023 ATGGATTTCCAGGGATTCCTGAACGACTTGCAGGATTGGGAACTTTCTAGAAAAGATAAAACACAAACAGTGAAGTCACAAAAGGAAAATGTTGGAAATTCTCCAGGATTGTACGATTTATCAAAAATTAGTGATCCTTTGAATCGGTTGCATGGTAGTTTTGTTCCTGAAGATGTTCCTGATGCTGCTTCTGAGAAAGATCTGGGTAATGAGTTTTTCAAGCAGAAGAAATTTAAGGAAGCTAGAGACTGCTATTCAAGGAGCATTGCCCTATCACCAACAGCTGTAGCATATGCAAATAGGGCAATGGCCAATATCAAGCTCAGAAGATTCCAAGAGGCTGAGGATGACTGCACAGAGGCCTTAGATCTTGATGATCGTTACATAAAAGCATATTCACGAAGAGCAACAGCTAGAAAAGAACTTGGGAAAATTAAAGAATCAATGGAAGATGCTGAGTTTGCTTTGAGGTTGGAACCAAACAATCAAGAAATCAAGAAACAGTATGCCGATGCTAAATCTTTGTATGAGAAAGATATTCTTCAGAAAGCATCAGGAGCTATGAGAAGCACTGTACAGGAAACTCGAAAAGTGGGAAAGTCAGAGGAAAAAGTTAACGGAGGTAGCATCCACCCCATTTCACATGGTACTCAAAAGTCCGGTCCAGCTGAAATTAATCATAAAAAGGTTAATGAGCAGCAAATACCTGTTAAAGAATCACTTATAACAGAGGAGGTCGATAGCAGAGACACAATAACCAGAAAAAGGCCTCAAGCACAAGGAGGTGATGATTCTAGGAAAGGTTTGAGTGCAAGTAACAGTTTGGAGCAGAGAAATCACAGAATTATTAAGCCCGAAATGAAAGCATCTGTTCAACAGCTTGCTTCTCGTGCTGCTTCTAGAGCCATGGCTGAAGCTGCTAAAAACATAACACCACCAACCACTGCGTACCAGTTTGAGGTCTCATGGAGATCATTTTCAGGTGATCTTGCTCTGCAGGCTCGTCTATTAAAGGCTATATCTCCCCGCGAATTACCGAAAATATTCAAAAATGCTTTATCTTCTACCGTACTTGTTGACATCATCAAGTGTCTCTCATCTTTTTTCACTGAGGACATGGATCTGGTTGTCAGTTATATGGAGTATTTGATCAAAGTTCCAAGATTTGACATGATTGTAATGTGCCTCTCATCAACAAATAAGGATGACATACGCAAGATCTGGGATGAAGTGTTCAAAAGTGAGGCAACACCAATTGAGTATGCAGAGATTCTAGACAACCTCCGATCAAAGTTCTGCCTTGGACAGTGA 1311 0.4043 MDFQGFLNDLQDWELSRKDKTQTVKSQKENVGNSPGLYDLSKISDPLNRLHGSFVPEDVPDAASEKDLGNEFFKQKKFKEARDCYSRSIALSPTAVAYANRAMANIKLRRFQEAEDDCTEALDLDDRYIKAYSRRATARKELGKIKESMEDAEFALRLEPNNQEIKKQYADAKSLYEKDILQKASGAMRSTVQETRKVGKSEEKVNGGSIHPISHGTQKSGPAEINHKKVNEQQIPVKESLITEEVDSRDTITRKRPQAQGGDDSRKGLSASNSLEQRNHRIIKPEMKASVQQLASRAASRAMAEAAKNITPPTTAYQFEVSWRSFSGDLALQARLLKAISPRELPKIFKNALSSTVLVDIIKCLSSFFTEDMDLVVSYMEYLIKVPRFDMIVMCLSSTNKDDIRKIWDEVFKSEATPIEYAEILDNLRSKFCLGQ 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1519g00023 436 Gene3D Tetratricopeptide repeat domain 55 160 IPR011990 GO:0005515
Vium1519g00023 436 Pfam Tetratricopeptide repeat 97 125 IPR019734 GO:0005515
Vium1519g00023 436 PANTHER OS05G0129900 PROTEIN 1 435 - -
Vium1519g00023 436 SUPERFAMILY TPR-like 58 174 IPR011990 GO:0005515
Vium1519g00023 436 MobiDBLite consensus disorder prediction 242 262 - -
Vium1519g00023 436 ProSiteProfiles TPR repeat profile. 129 162 IPR019734 GO:0005515
Vium1519g00023 436 SMART tpr_5 129 162 IPR019734 GO:0005515
Vium1519g00023 436 SMART tpr_5 62 95 IPR019734 GO:0005515
Vium1519g00023 436 SMART tpr_5 96 128 IPR019734 GO:0005515
Vium1519g00023 436 MobiDBLite consensus disorder prediction 18 37 - -
Vium1519g00023 436 ProSiteProfiles TPR repeat profile. 62 95 IPR019734 GO:0005515
Vium1519g00023 436 Pfam Potential Monad-binding region of RPAP3 312 401 IPR025986 -
Vium1519g00023 436 MobiDBLite consensus disorder prediction 187 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1519g00023 Vium-Chr1519 173767 179272 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1519g00023 66 132 U-box Gene Family AT3G07370 39.706 1.22e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1519g00023 K23002 - gmx:100784528 710.294