Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1519g00022 ATGGATTTCCAGGGATTCCTGAACGACTTGCAGGATTGGGAACTTTCTAGAAAAGATAAAACACAAACAGTGAAGTCACAAAAGGAAAATCAATTCCCAAAAGCTTCGTCTTCTCGACTTACTGGATCTGTGGGCGTGGATAAGGCAGCAAAAGCAGATACTAAATCTTTTGATCGTGCAGGAAATTCTCCAGGATTGTACGATTTATCAAAAATTAGTGATCCTTTGAATCGGTTGCATGGTAGTTTTGTTCCTGAAGATGTTCCTGATGCTGCTTCTGAGAAAGATCTGGGTAATGAGTTTTTCAAGCAGAAGAAATTTAAGGAAGCTAGAGACTGCTATTCAAGGAGCATTGCCCTATCACCAACAGCTGTAGCATATGCAAATAGGGCAATGGCCAATATCAAGCTCAGAAGATTCCAAGAGGCTGAGGATGACTGCACAGAGGCCTTAGATCTTGATGATCGTTACATAAAAGCATATTCACGAAGAGCAACAGCTAGAAAAGAACTTGGGAAAATTAAAGAATCAATGGAAGATGCTGAGTTTGCTTTGAGGTTGGAACCAAACAATCAAGAAATCAAGAAACAGTATGCCGATGCTAAATCTTTGTATGAGAAAGATATTCTTCAGAAAGCATCAGGAGCTATGAGAAGCACTGTACAGGAAACTCGAAAAGTGGGAAAGTCAGAGGAAAAAGTTAACGGAGGTAGCATCCACCCCATTTCACATGGTACTCAAAAGTCCGGTCCAGCTGAAATTAATCATAAAAAGGTTAATGAGCAGCAAATACCTGTTAAAGAATCACTTATAACAGAGGAGGTCGATAGCAGAGACACAATAACCAGAAAAAGGCCTCAAGCACAAGGAGGTGATGATTCTAGGAAAGGTTTGAGTGCAAGTAACAGTTTGGAGCAGAGAAATCACAGAATTATTAAGCCCGAAATGAAAGCATCTGTTCAACAGCTTGCTTCTCGTGCTGCTTCTAGAGCCATGGCTGAAGCTGCTAAAAACATAACACCACCAACCACTGCGTACCAGTTTGAGGTCTCATGGAGATCATTTTCAGGTGATCTTGCTCTGCAGGCTCGTCTATTAAAGGCTATATCTCCCCGCGAATTACCGAAAATATTCAAAAATGCTTTATCTTCTACCGTACTTGTTGACATCATCAAGTGTCTCTCATCTTTTTTCACTGAGGACATGGATCTGGTTGTCAGTTATATGGAGTATTTGATCAAAGTTCCAAGATTTGACATGATTGTAATGTGCCTCTCATCAACAAATAAGGATGACATACGCAAGATCTGGGATGAAGTGTTCAAAAGTGAGGCAACACCAATTGAGTATGCAGAGATTCTAGACAACCTCCGATCAAAGTTCTGCCTTGGACAGTGA 1398 0.407 MDFQGFLNDLQDWELSRKDKTQTVKSQKENQFPKASSSRLTGSVGVDKAAKADTKSFDRAGNSPGLYDLSKISDPLNRLHGSFVPEDVPDAASEKDLGNEFFKQKKFKEARDCYSRSIALSPTAVAYANRAMANIKLRRFQEAEDDCTEALDLDDRYIKAYSRRATARKELGKIKESMEDAEFALRLEPNNQEIKKQYADAKSLYEKDILQKASGAMRSTVQETRKVGKSEEKVNGGSIHPISHGTQKSGPAEINHKKVNEQQIPVKESLITEEVDSRDTITRKRPQAQGGDDSRKGLSASNSLEQRNHRIIKPEMKASVQQLASRAASRAMAEAAKNITPPTTAYQFEVSWRSFSGDLALQARLLKAISPRELPKIFKNALSSTVLVDIIKCLSSFFTEDMDLVVSYMEYLIKVPRFDMIVMCLSSTNKDDIRKIWDEVFKSEATPIEYAEILDNLRSKFCLGQ 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1519g00022 465 Gene3D Tetratricopeptide repeat domain 84 189 IPR011990 GO:0005515
Vium1519g00022 465 ProSiteProfiles TPR repeat profile. 158 191 IPR019734 GO:0005515
Vium1519g00022 465 MobiDBLite consensus disorder prediction 216 312 - -
Vium1519g00022 465 Pfam Potential Monad-binding region of RPAP3 341 430 IPR025986 -
Vium1519g00022 465 MobiDBLite consensus disorder prediction 26 43 - -
Vium1519g00022 465 PANTHER OS05G0129900 PROTEIN 1 464 - -
Vium1519g00022 465 MobiDBLite consensus disorder prediction 18 57 - -
Vium1519g00022 465 ProSiteProfiles TPR repeat profile. 91 124 IPR019734 GO:0005515
Vium1519g00022 465 Pfam Tetratricopeptide repeat 126 154 IPR019734 GO:0005515
Vium1519g00022 465 SUPERFAMILY TPR-like 87 203 IPR011990 GO:0005515
Vium1519g00022 465 MobiDBLite consensus disorder prediction 271 291 - -
Vium1519g00022 465 SMART tpr_5 158 191 IPR019734 GO:0005515
Vium1519g00022 465 SMART tpr_5 91 124 IPR019734 GO:0005515
Vium1519g00022 465 SMART tpr_5 125 157 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1519g00022 Vium-Chr1519 173767 179272 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1519g00022 95 161 U-box Gene Family AT3G07370 39.706 1.34e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1519g00022 K23002 - gmx:100784528 746.117