Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1519g00019 ATGGAAAACTTTTACAAGCTCAACTCTCTCCTATCTTGTACCGAGGATGTTGTTAGAGGAGTCAACGTCAACGTTTCCTCCGCCGCCGCATCTGAATTGAATCTAGGACTTGTGGCCAATAACTTCCTTCAGCTAGAAGAGCCAGAAAGTTCCGATATGTCGGAACGATTCATCAAGACCCAGATCGCCACTCACCCTCTTTATCCAAATCTAGTATCTGCTTACATAGAATGCCGAAAGGTTGGAGCACCGCCGGAACTCGCTTCACTTCTTGAAGAAATAGCCCGTGAAAGCCACCCAACGCATGCTCTTCGTGAGATAGGAGACGATCCCGAGCTTGACGAGTTCATGGAATCGTACTGCGAAATTCTTCATAGATACAAGCAGGAGTTGTCCAAGCCATTCAACGAAGCGACCTTGTTTTTGTGTAGTATCGAATCACAACTCAGCAATCTTTGTAAGGGAACACTTACATTGCCACTGGATAACAACCGCTCAGATGAGGCGGCTGGGACGTCAGAAGATGAATTGAGTTGGGAGAAGATGGAAACAGTGGAAGGTGTGGAGGAATCTTCTGGGTCTCGTCCCGGTGATCAAGAGCTTAAAGAAATACTCCTTCGTAAGTATGGTGGTTATCTTAGCAGCTTAAGAAAGGAATTTTTGAAGAAAAGGAAAAAGGGTAAACTTCCGAAGGAGGCAAGGAGGATACTCTTGGACTGGTGGAGCACTCACTATAGGTGGCCTTATCCTACGGAGGAGGAGAAAGTGCAACTATCAGAAATGACAGGACTTGATCAAAAGCAGATAAACAATTGGTTCATCAACCAAAGGAAACGGCATTGGAAACCATCTGAAGACATGCGATTTGCGATTATGGATGGTGTAAGTGGCAGCGCCATAGGTAGAGGACATATGTAG 918 0.4564 MENFYKLNSLLSCTEDVVRGVNVNVSSAAASELNLGLVANNFLQLEEPESSDMSERFIKTQIATHPLYPNLVSAYIECRKVGAPPELASLLEEIARESHPTHALREIGDDPELDEFMESYCEILHRYKQELSKPFNEATLFLCSIESQLSNLCKGTLTLPLDNNRSDEAAGTSEDELSWEKMETVEGVEESSGSRPGDQELKEILLRKYGGYLSSLRKEFLKKRKKGKLPKEARRILLDWWSTHYRWPYPTEEEKVQLSEMTGLDQKQINNWFINQRKRHWKPSEDMRFAIMDGVSGSAIGRGHM 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1519g00019 305 SMART ELK_2 200 221 IPR005539 GO:0003677
Vium1519g00019 305 MobiDBLite consensus disorder prediction 163 197 - -
Vium1519g00019 305 ProSitePatterns 'Homeobox' domain signature. 258 281 IPR017970 GO:0000981|GO:0006355
Vium1519g00019 305 CDD homeodomain 232 284 IPR001356 GO:0003677
Vium1519g00019 305 ProSiteProfiles 'Homeobox' domain profile. 220 283 IPR001356 GO:0003677
Vium1519g00019 305 Pfam KNOX2 domain 107 153 IPR005541 GO:0003677|GO:0005634
Vium1519g00019 305 Gene3D - 218 290 - -
Vium1519g00019 305 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 60 290 - -
Vium1519g00019 305 SMART KNOX2_2 103 154 IPR005541 GO:0003677|GO:0005634
Vium1519g00019 305 SUPERFAMILY Homeodomain-like 222 295 IPR009057 -
Vium1519g00019 305 Pfam ELK domain 200 221 IPR005539 GO:0003677
Vium1519g00019 305 Pfam KNOX1 domain 58 99 IPR005540 GO:0003677|GO:0005634
Vium1519g00019 305 Pfam Homeobox KN domain 240 279 IPR008422 GO:0003677|GO:0006355
Vium1519g00019 305 SMART HOX_1 222 287 IPR001356 GO:0003677
Vium1519g00019 305 SMART KNOX1_2 56 100 IPR005540 GO:0003677|GO:0005634
Vium1519g00019 305 MobiDBLite consensus disorder prediction 168 197 - -
Vium1519g00019 305 ProSiteProfiles ELK domain profile. 200 220 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1519g00019 Vium-Chr1519 139727 144177 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1519g00019 52 298 Homeobox Transcription Factor Family AT1G23380 55.469 7.22e-87 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Vium1519g00019 KNOX2 1.6e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1519g00019 - - gmx:102660463 516.924