Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1519g00004 ATGGAGGTTCACAGAAGACGTTTCAAGGGAAGCTTTCTTAGCTTCTTTGACTGGAATGCTAAATATCAAAAGAAGCACCTTTCTCACGATCCTAAGTTGCCTGAAATTTCAAAGCAAGGAAAGGAAAACGTGGACAATTTGCCAAAGTCAGAGGTCAATGAGATGAAAATGAATGACAATGGAGCAAATCCTGCAAGTTCTGATTTTGATTGTGCCATATCAATTAGTAGTGATGAAGGGTGTCAGACTAAAGCCCCAGGGTTACTAGCCAGACTCATGGGTTTGGATTCACTGCCAGTTTCAAATGTCTCTGAGCTATCTTCATTATCCACTTCCTTATATGGCTCCAACTCTCTTGAATCTTCTCGTACTCCTGATGAGGATGTTCTTCTCTCAACGGTTGACCATTGTTGTAATGTTGATTCGATAAACATGGGACTTAAGTCGGTGAAGTCTTCTTGGAGTGTCATGGAATCAAAAGAGAGAAATCCAGCCATGAAAAGATTTCAGACTGAAATGCTGCCTCCAAGGTCTGCCAAAACCATTCCAGTTACTCACGACAAACTTTTGTCTCAACCTAAGCATGCAGCTCAAATTATGGAGGCAGCTGCCAAAATAATTGAGGTAAGTCCCCAGCCATGTAAGAGGAACAGAATGTCTTCAACTGGACCTTCATCTGTACCCTTAAGAATTCTTGAACTCAAAGAGAAATTGGAAGCTTCCCAACATGAATCCAAGTTCACAGGTAAGCACACTGCTAACCCTCTGAATGGCAAGCCTAGTGAGAGGAGAAATAGTTTATGTAAATCTACTCCAAGTTCAACAGGTTCAAGAGATTCAGAAAAAAACAGTTCTTGCCGGTTGCCAAGCAAAAGAAAATCTGCTTCACTTGCAATTCCATCTAGAACCAATGTTCAGAACTGTGATGAATTGACTTTGAATGGTAATAGGGGATGTGTGAAGCAGAAGGAACATAATGATATCAAATCAAACCAGTTGTCTCGGAGCCAGAAGAAACGAAGTACAGACCGAGCCAGAGTCATTCAGCAGAAAGCTTGTAATGGCCAGAATAGTAATGTGCTTGGGAAGAATAACCAAAAACTGTGTAGTGAAACCACCAAAAGTAACCCGACTTCCAAGGCATACTCGCATAAACCAACACAAAATTGGTCTTCAGAAAGTTCTACTAGAGCAAAGAAGACCACAAAAAGGGGTGTTGTAAAAGCCAACACTGAGCCCAAAGGGTCAGACACAAGGGTAATAGGTGCTACCAAACCAGTTTCCAAAAGAAAGAGCATTTCCCAAAAGAAAAACTATATGAATAGGGATGTTCACAATGAGGCAAGAGGCACTGATACTGCGGCTAATAATTATGAAAACAAGTCTATAAAATGCAATATTACAACTGACGGAAGTATTAACCAGGATGCATTTAGTATGAAAGGAAGCAATGGTGTGATTTCATTTATATTTACATCTCCTTTGAGAAGAAAAAGTCCTGAGTTACAGTCCTCCATTGAGAAAATGGTGGAAACAAGGAACAAAACTGATGTCAATTCTTGTAGCAATAATGATATGCTCAATCCCAGAAAATCATCATTATCTCCTCCCAGGTTACATGTTATAGATGGTGAGGCTTTAAGTGTCCTTTTGGAGAGAAAGCTGCAAGAATTGACATCTAGAATTAACCCAACTCAATGCTCTGTGATGAAAGAATGGTCTTCTGCTGGTTTGGAAGACAGAAGTTTTCACCCCAACCTGGTTAGTAATAAATTGGACAGCAGGCATGACAATTGTTTGTCAAGTGATAGCATGGTGCTTAGTATGAATCAGCAACCACAGACATCAGAATCAATAGAAGGGCCTAGCTGCAGCAGCAACAGCGAAAGCAGAAATGAAAGTTACTTAGATAGTGCATATGGCAGCACAGTTTATTCTTCCATGCAAGATGAAGAGGTATCTGATTTTTCTCCAATGAATGAATCTCTGAGGTCTGAGCAAAGCTCTTGCATAATGATGGGAGATGACATGATTGCCATTGAACAATCAAGTATAATGTCAAATTCAGTCGAGTTTACAAGATTATCTAGGAACGTGGAATTTGAATACGTAAAGGATATACTCAACAGTGCAGAGCTGGTGACAGAAAAATTTCTGATGGGTGAGACAGATAAGATCATAATGCCAAATCTCTTTGATCTGTTGGAGACTAAGAGCACTGTGGCAGAAAGCTATGAAGAGTACTATAAGATCGAGAGAAAGGTTATATTTGACACAGTGAGTGAATGCTTAGAGTTAAGATGTAGAAAAGTTTTTGTTGGAAGCTGCAAAGCAATGCCTAAATGGATGGCTTCAGTTCAGAAGAAGAGCTCTTTAGCTGAAGATTTGTACAAGGAAATGTTGAACCTTAGGAGCATGGAAGAATCAGTGGTGGAGGAACTAGTCTACAAGGACATGAGTACTCCATGGGGTAGATGGCTTGAGTTTGACACTGAAGCATTTGAAGAGGGTTTAGAACTTGAATTTGATGTTTTCACATGTTTGATTAACGAATTGGTTTCTGATTTGTTGCAGTTTTAA 2580 0.3981 MEVHRRRFKGSFLSFFDWNAKYQKKHLSHDPKLPEISKQGKENVDNLPKSEVNEMKMNDNGANPASSDFDCAISISSDEGCQTKAPGLLARLMGLDSLPVSNVSELSSLSTSLYGSNSLESSRTPDEDVLLSTVDHCCNVDSINMGLKSVKSSWSVMESKERNPAMKRFQTEMLPPRSAKTIPVTHDKLLSQPKHAAQIMEAAAKIIEVSPQPCKRNRMSSTGPSSVPLRILELKEKLEASQHESKFTGKHTANPLNGKPSERRNSLCKSTPSSTGSRDSEKNSSCRLPSKRKSASLAIPSRTNVQNCDELTLNGNRGCVKQKEHNDIKSNQLSRSQKKRSTDRARVIQQKACNGQNSNVLGKNNQKLCSETTKSNPTSKAYSHKPTQNWSSESSTRAKKTTKRGVVKANTEPKGSDTRVIGATKPVSKRKSISQKKNYMNRDVHNEARGTDTAANNYENKSIKCNITTDGSINQDAFSMKGSNGVISFIFTSPLRRKSPELQSSIEKMVETRNKTDVNSCSNNDMLNPRKSSLSPPRLHVIDGEALSVLLERKLQELTSRINPTQCSVMKEWSSAGLEDRSFHPNLVSNKLDSRHDNCLSSDSMVLSMNQQPQTSESIEGPSCSSNSESRNESYLDSAYGSTVYSSMQDEEVSDFSPMNESLRSEQSSCIMMGDDMIAIEQSSIMSNSVEFTRLSRNVEFEYVKDILNSAELVTEKFLMGETDKIIMPNLFDLLETKSTVAESYEEYYKIERKVIFDTVSECLELRCRKVFVGSCKAMPKWMASVQKKSSLAEDLYKEMLNLRSMEESVVEELVYKDMSTPWGRWLEFDTEAFEEGLELEFDVFTCLINELVSDLLQF 859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1519g00004 859 MobiDBLite consensus disorder prediction 322 420 - -
Vium1519g00004 859 MobiDBLite consensus disorder prediction 322 346 - -
Vium1519g00004 859 MobiDBLite consensus disorder prediction 608 633 - -
Vium1519g00004 859 MobiDBLite consensus disorder prediction 347 396 - -
Vium1519g00004 859 Pfam Domain of unknown function (DUF4378) 700 851 IPR025486 -
Vium1519g00004 859 PANTHER PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT P DOWN SYNDROME CRITICAL REGION PROTEIN 5 -RELATED 2 855 - -
Vium1519g00004 859 MobiDBLite consensus disorder prediction 240 299 - -
Vium1519g00004 859 Pfam DUF761-associated sequence motif 77 104 IPR032795 -
Vium1519g00004 859 MobiDBLite consensus disorder prediction 247 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1519g00004 Vium-Chr1519 28980 33091 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1519g00004 3 857 TRM (TON1 Recruiting Motif) Superfamily AT3G58650 30.667 3.89e-77 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1519g00004 - - vra:106771019 1543.87