Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1519g00003 ATGGAGGTTCACAGAAGACGTTTCAAGGGAAGCTTTCTTAGCTTCTTTGACTGGAATGCTAAATATCAAAAGAAGCACCTTTCTCACGATCCTAAGTTGCCTGAAATTTCAAAGCAAGGAAAGGAAAACGTGGACAATTTGCCAAAGTCAGAGGTCAATGAGATGAAAATGAATGACAATGGAGCAAATCCTGCAAGTTCTGATTTTGATTGTGCCATATCAATTAGTAGTGATGAAGGGTGTCAGACTAAAGCCCCTGGGTTACTAGCCAGACTCATGGGTTTGGATTCACTGCCAGTTTCAAATGTCTCTGAGCTATCTTCATTATCCACTTCCTTATATGGCTCCAACTCTCTTGAATCTTCTCGTACTCCTGATGAGGATGTTCTTCTCTCAACGGTTGACCATTGTTGTAATGTTGATTCGATAAACATGGGACTTAAGTCGGTGAAGTCTTCTTGGAGTGTCATGGAATCAAAAGAGAGAAATCCGGCCATGAAAAGATTTCAGACTGAAATGCTGCCTCCAAGGTCTGCCAAAACCATTCCAGTTACTCACGACAAACTTTTGTCTCAACCTAAGCATGCAGCTCAAATTATGGAGGCAGCTGCCAAAATAATTGAGGTAAGTCCCCAGCCATGTAAGAGGAACAGAATGTCTTCAACTGGACCTTCATCTGTACCCTTAAGAATTCTTGAACTCAAAGAGAAATTGGAAGCTTCCCAACATGAATCCAAGTTCACAGGTAAGCACACTGCTAACCCTCTGAATGGCAAGCCTAGTGAGAGGAGAAATAGTTTATGTAAATCTACTCCAAGTTCAACAGGTTCAAGAGATTCAGAAAAAAACAGTTCTTGCCGGTTGCCAAGCAAAAGAAAATCTGCTTCACTTGCAATTCCATCTAGAACCAATGTTCAGAACTGTGATGAATTGACTTTGAATGGTAATAGGGGATGTGTGAAGCAGAAGGAACATAATGATATCAAATCAAACCAGTTGTCTCGGAGCCAGAAGAAACGAAGTACAGACCGAGCCAGAGTCATTCAGCAGAAAGCTTGTAATGGCCAGAATAGTAATGTGCTTGGGAAGAATAACCAAAAACTGTGTAGTGAAACCACCAAAAGTAACCCGACTTCCAAGGCATACTCGCATAAACCAACACAAAATTGGTCTTCAGAAAGTTCTACTAGAGCAAAGAAGACCACAAAAAGGGGTGTTGTAAAAGCCAACACTGAGCCCAAAGGGTCAGACACAAGGGTAATAGGTGCTACCAAACCAGTTTCCAAAAGAAAGAGCATTTCCCAAAAGAAAAACTATATGAATAGGGATGTTCACAATGAGGCAAGAGGCACTGATACTGCGGCTAATAATTATGAAAACAAGTCTATAAAATGCAATATTACAACTGACGGAAGTATTAACCAGGATGCATTTAGTATGAAAGGAAGCAATGGTGTGATTTCATTTATATTTACATCTCCTTTGAGAAGAAAAAGTCCTGAGTTACAGTCCTCCATTGAGAAAATGGTGGAAACAAGGAACAAAACTGATGTCAATTCTTGTAGCAATAATGATATGCTCAATCCCAGAAAATCATCATTATCTCCTCCCAGGTTACATGTTATAGATGGTGAGGCTTTAAGTGTCCTTTTGGAGAGAAAGCTGCAAGAATTGACATCTAGAATTAACCCAACTCAATGCTCTGTGATGAAAGAATGGTCTTCTGCTGGTTTGGAAGACAGAAGTTTTCACCCCAACCTGGTTAGTAATAAATTGGACAGCAGGCATGACAATTGTTTGTCAAGTGATAGCATGGTGCTTAGTATGAATCAGCAACCACAGACATCAGAATCAATAGAAGGGCCTAGCTGCAGCAGCAACAGCGAAAGCAGAAATGAAAGTTACTTAGATAGTGCATATGGCAGCACAGTTTATTCTTCCATGCAAGATGAAGAGGTATCTGATTTTTCTCCAATGAATGAATCTCTGAGGTCTGAGCAAAGCTCTTATTAA 2013 0.4029 MEVHRRRFKGSFLSFFDWNAKYQKKHLSHDPKLPEISKQGKENVDNLPKSEVNEMKMNDNGANPASSDFDCAISISSDEGCQTKAPGLLARLMGLDSLPVSNVSELSSLSTSLYGSNSLESSRTPDEDVLLSTVDHCCNVDSINMGLKSVKSSWSVMESKERNPAMKRFQTEMLPPRSAKTIPVTHDKLLSQPKHAAQIMEAAAKIIEVSPQPCKRNRMSSTGPSSVPLRILELKEKLEASQHESKFTGKHTANPLNGKPSERRNSLCKSTPSSTGSRDSEKNSSCRLPSKRKSASLAIPSRTNVQNCDELTLNGNRGCVKQKEHNDIKSNQLSRSQKKRSTDRARVIQQKACNGQNSNVLGKNNQKLCSETTKSNPTSKAYSHKPTQNWSSESSTRAKKTTKRGVVKANTEPKGSDTRVIGATKPVSKRKSISQKKNYMNRDVHNEARGTDTAANNYENKSIKCNITTDGSINQDAFSMKGSNGVISFIFTSPLRRKSPELQSSIEKMVETRNKTDVNSCSNNDMLNPRKSSLSPPRLHVIDGEALSVLLERKLQELTSRINPTQCSVMKEWSSAGLEDRSFHPNLVSNKLDSRHDNCLSSDSMVLSMNQQPQTSESIEGPSCSSNSESRNESYLDSAYGSTVYSSMQDEEVSDFSPMNESLRSEQSSY 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1519g00003 670 MobiDBLite consensus disorder prediction 322 420 - -
Vium1519g00003 670 MobiDBLite consensus disorder prediction 608 670 - -
Vium1519g00003 670 Pfam DUF761-associated sequence motif 77 104 IPR032795 -
Vium1519g00003 670 MobiDBLite consensus disorder prediction 322 346 - -
Vium1519g00003 670 MobiDBLite consensus disorder prediction 347 396 - -
Vium1519g00003 670 MobiDBLite consensus disorder prediction 240 299 - -
Vium1519g00003 670 MobiDBLite consensus disorder prediction 247 283 - -
Vium1519g00003 670 PANTHER PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT P DOWN SYNDROME CRITICAL REGION PROTEIN 5 -RELATED 2 665 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1519g00003 Vium-Chr1519 22323 29008 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1519g00003 3 572 TRM (TON1 Recruiting Motif) Superfamily AT3G58650 31.631 1.23e-45 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1519g00003 - - vum:124826723 1285.4