Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium15179g00002 ATGGCAGAGGTTGTTTTGTTAGTCGATGATTTGAAACTGCTTTCTGGGATTCCTCGCTGTAGAATTTGTCATGAAGAGGAGTTTGAAAGCATAGAAACCTTGGAAGCACCTTGTGCTTGTTCTGGAACCGTTAAGTTTGCTCATAGAGATTGCATACAAAGATGGTGCAACGAGAAAGGAAATACAACCTGTGAAATATGTCTCCAGAGGGAGGAAGAAGAAGAGTCAAACGAAAGAACAGAGATAACGGTTGAAGGAGTTGCAGTGGAAAGCGATTACTCGGAATGCAGTTCAGGCGGTGACAGAAGCGCGTCTTGCTGTCGATCCCTTGCAATAGCTTTTACAATTGTCTTGCTAGTAAGACATTTTTTCGCAGTGCTTTCAAATGGAACGCAAGATTACCCATTTACTCTACTTACTGTCATTATATTAAAGGCTAGCGGAATTATTATACCTATGTACATAGTTATTAAGATTGTTGGAGCCATTCAGAACAGTAGTGAGCAGTATCAGGATTCTGACGATGAAGATGAGATACGTCATAATGTAAATTTAAGACATTCATAG 567 0.4004 MAEVVLLVDDLKLLSGIPRCRICHEEEFESIETLEAPCACSGTVKFAHRDCIQRWCNEKGNTTCEICLQREEEEESNERTEITVEGVAVESDYSECSSGGDRSASCCRSLAIAFTIVLLVRHFFAVLSNGTQDYPFTLLTVIILKASGIIIPMYIVIKIVGAIQNSSEQYQDSDDEDEIRHNVNLRHS 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium15179g00002 188 Pfam RING-variant domain 20 67 IPR011016 GO:0008270
Vium15179g00002 188 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 80 IPR013083 -
Vium15179g00002 188 CDD RING_CH-C4HC3_MARCH 20 67 - -
Vium15179g00002 188 SMART ringv_2 19 68 IPR011016 GO:0008270
Vium15179g00002 188 ProSiteProfiles Zinc finger RING-CH-type profile. 12 74 IPR011016 GO:0008270
Vium15179g00002 188 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 19 169 IPR033275 -
Vium15179g00002 188 FunFam E3 ubiquitin-protein ligase MARCH4 9 79 - -
Vium15179g00002 188 SUPERFAMILY RING/U-box 18 69 - -
Vium15179g00002 188 ProSiteProfiles Zinc finger RING-type profile. 20 67 IPR001841 -
Vium15179g00002 188 Pfam Protein of unknown function (DUF3675) 67 159 IPR022143 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium15179g00002 Vium-Chr15179 7070 10883 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium15179g00002 20 67 C3H Transcription Factor Family AT2G37950 42.857 4.60e-06 43.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium15179g00002 - - vum:124822982 352.829