Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium15178g00001 ATGTTTTTCATCCTTTATTCTCTTTATGCATGGATTTTACTTTTTAACCTCACATTCTTTCACGTGCAGGAGTACCTCCATTTCTATTGCGATCCTCCTCTGTGTCACAGAGATATTAAATCTAGCAACACTTTACTGGATGAGAACTTTGTTGCCAAGATAGCTGATTTTGGTCTTGCACAAGCTTCAAAAGATGGATCGGTATGCTTTGAACCTGTAAACACTGAAATTCGGGGAACTCCGGGTTATATGGATCCTGAGTATGTTGTTACTCAAGAGCTCACCGAGAAAAGTGACATATACAGTTTTGGGGTATTACTACTTGAAATTGTAACAGGAAGACGAGCCATTCAAGATAATAAGAATCTAGTAGAATGGGCCCAACCATACATGGAATCAGATACGAGATTATTGGAGCTAGTAGATCCCAATGTGAGGGAATCTTTTGACTTGGATCAGCTCCAAACAGTAATATCTATAGTAGCATGGTGCACCCATAGAGAAGGAAGGGCAAGGCCTTCAATAAAACAGGTACTTAGGCTTCTGTATGAAACATCAGAACCAATGCACAGTGAGTTTCTACAAACTGTTGAAGATGAAGAATGTCATGGAAGTCAGCACAGAGGCAGAAGAAGCAAGGGGAAAATGCTCAGAAATGAAGCATTGTTTCACAGCGGAGAGGGAAGATATCTTGCTTCATCTTCGAGTACATCCCGGTCATATTGCAGTAGAAGTTTTTTACTTGAGACTGGCTCTCCACAGTCTCCGCCAAATATGTTCTCTGTGTGA 789 0.4081 MFFILYSLYAWILLFNLTFFHVQEYLHFYCDPPLCHRDIKSSNTLLDENFVAKIADFGLAQASKDGSVCFEPVNTEIRGTPGYMDPEYVVTQELTEKSDIYSFGVLLLEIVTGRRAIQDNKNLVEWAQPYMESDTRLLELVDPNVRESFDLDQLQTVISIVAWCTHREGRARPSIKQVLRLLYETSEPMHSEFLQTVEDEECHGSQHRGRRSKGKMLRNEALFHSGEGRYLASSSSTSRSYCSRSFLLETGSPQSPPNMFSV 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium15178g00001 262 Gene3D Transferase(Phosphotransferase) domain 1 17 207 - -
Vium15178g00001 262 SMART serkin_6 2 182 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium15178g00001 262 ProSitePatterns Serine/Threonine protein kinases active-site signature. 34 46 IPR008271 GO:0004672|GO:0006468
Vium15178g00001 262 FunFam Putative receptor-like protein kinase 14 190 - -
Vium15178g00001 262 Pfam Protein kinase domain 24 180 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium15178g00001 262 PANTHER OS01G0750732 PROTEIN 24 202 - -
Vium15178g00001 262 ProSiteProfiles Protein kinase domain profile. 1 193 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium15178g00001 262 SUPERFAMILY Protein kinase-like (PK-like) 24 185 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium15178g00001 Vium-Chr15178 38 1307 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium15178g00001 24 261 Receptor kinase-like Gene Family AT3G19300 64.435 6.23e-104 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_URK-1 Vium15178g00001 Pkinase 2.2e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium15178g00001 - - vum:124822979 529.25