Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium15176g00001 ATGGGTAGCGAAGAAGAGAGGGTTCTTGAGAACCAACTCGAACTTCAATTGCAAGAGCAAAGGGATTCTCTCTCTGCTATCGATCAAGCTCTCCTCTCTGATCCAACAAACCCTGAGCTTCTCGCGGAAGCGGATGCAATTCTGCATAACACTAATATTTTTGCTGAAGAGGAGAAAGTGGAACTCCTTGATCCCAGAGATGTTGAACCAGAACCTTTGGAGGGAAAAAGTCATTCTGTTGGATCTAAATGTAGATTCCGTCACATAGATGGGCGCTGGTACAACGGTCAAGTGGTGCAGTTGGATAATTCAGTGGCAAAAGTTTCATTCCTTACACCTACGTCTGAGAATATGCTGATGTGCAAGTTCTTTTTACAACAACGATGTCGATTTGGTAGTAACTGTCGCCTATCACATGGAGTTGATGTTCACTTGTCCGCTCTTAAGAAATTTGTCCCTACAATCTGGAAGGAATCCCTTGTCGGATCAAGCATATGGGCAGTCTCAACTGCAAATTCAGGCACTTGGAGAGAAGCCGAGCTCGAGTCCTGGGACGAAAAGGCTGGAGTTGGACAAGTTGTTTTCCGAGATGATGGTAGTACTGTGAAACTTGGTGCAGAACAAATTACACTGTCTGAGCATGCAGAAGTGAGTGACTCAGAGAGTGATTCCAGCATACCGCAATCTGAGTCCAGTGACTATGAGGAGGATGATGAATCTCAAGGTTTAGGATTTCTGGAGAGTACCAACCTACAGAGAGGAGTTCAAACTGAAACTGCAACATTTGCCACTTGGGAAAACCACACCAGAGGCATAGCGTCCAAAATGATGGCTAATATGGGGTACAGAGAAGGAATGGGTTTAGGTGTAACGGGTCAGGGAATGCTGGACCCCATACCAGTGAAGATGATACCACCAAAGCAATCCTTGGATCATGCTCTTGAGTCTCATAGAAGGGAAGAGAATGAAGACAAGGAAATGAAGAAGAAACGGAGCCGAGGTGGCAAGAGAAAACGTGAGAAGAAATTTGCAGAAGCAAATCGTGCAGCAAAAGAGGAAGAGGAGTCAACATCAGATGTCTTTGCATTGATAAACAATCAGCTGGCAATGCACAATGAGGCTTTCGGTGGTGGATCAACGAAGAAGCAGCAAAGTAAAGGTTCCGGGGAAGGTAGAAAGGTAGATAGACGAGCACTGGTTGCTTATGAGGAAGAGGTGAAGGATTTGAAGATGAAGGTTGAAAAGCTCGAGCAAATTGTGAATGTCAATAAGAAAGAGAAGGCTGTGTATGAGGCTGCTATGAGAAAACTAAATGAAACCCGCAAAGCCTTGGCTGATGCCGAAGCAGTTCATGCCTCTGCCTCAAATGCTGTTGTTAGCAAAGAAAAAGAGAAAAGGTGGCTCAAGTTTTAG 1413 0.4487 MGSEEERVLENQLELQLQEQRDSLSAIDQALLSDPTNPELLAEADAILHNTNIFAEEEKVELLDPRDVEPEPLEGKSHSVGSKCRFRHIDGRWYNGQVVQLDNSVAKVSFLTPTSENMLMCKFFLQQRCRFGSNCRLSHGVDVHLSALKKFVPTIWKESLVGSSIWAVSTANSGTWREAELESWDEKAGVGQVVFRDDGSTVKLGAEQITLSEHAEVSDSESDSSIPQSESSDYEEDDESQGLGFLESTNLQRGVQTETATFATWENHTRGIASKMMANMGYREGMGLGVTGQGMLDPIPVKMIPPKQSLDHALESHRREENEDKEMKKKRSRGGKRKREKKFAEANRAAKEEEESTSDVFALINNQLAMHNEAFGGGSTKKQQSKGSGEGRKVDRRALVAYEEEVKDLKMKVEKLEQIVNVNKKEKAVYEAAMRKLNETRKALADAEAVHASASNAVVSKEKEKRWLKF 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium15176g00001 470 MobiDBLite consensus disorder prediction 373 393 - -
Vium15176g00001 470 MobiDBLite consensus disorder prediction 339 358 - -
Vium15176g00001 470 MobiDBLite consensus disorder prediction 211 240 - -
Vium15176g00001 470 Gene3D - 93 152 - -
Vium15176g00001 470 SUPERFAMILY CCCH zinc finger 116 140 IPR036855 GO:0046872
Vium15176g00001 470 Pfam G-patch domain 269 305 IPR000467 GO:0003676
Vium15176g00001 470 ProSiteProfiles G-patch domain profile. 269 315 IPR000467 GO:0003676
Vium15176g00001 470 MobiDBLite consensus disorder prediction 313 330 - -
Vium15176g00001 470 SMART c3hfinal6 115 141 IPR000571 GO:0046872
Vium15176g00001 470 Coils Coil 430 450 - -
Vium15176g00001 470 Coils Coil 336 356 - -
Vium15176g00001 470 SMART G-patch_5 267 313 IPR000467 GO:0003676
Vium15176g00001 470 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 22 40 470 - -
Vium15176g00001 470 Coils Coil 399 426 - -
Vium15176g00001 470 Pfam CCCH-type zinc finger 120 140 IPR041367 -
Vium15176g00001 470 ProSiteProfiles Zinc finger C3H1-type profile. 115 142 IPR000571 GO:0046872
Vium15176g00001 470 MobiDBLite consensus disorder prediction 313 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium15176g00001 Vium-Chr15176 4503 10827 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vium15176g00001 G-patch 4.4e-11 CL0449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium15176g00001 - - gmx:100796284 700.279