Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1515g00008 ATGAACTACAGTATTTTAGTTCAGATCNGAAGCTGGAATGACAGTGGCTATGGAGCTTGTTCTGGAGGTTGGGTTGGTATCAAGTGTGCCCAGGGACAGGTTATTGTGATCCAGCTTCCATGGAAGGGGTTGAAGGGGCGTATCACCGAGAGGATTGGCCAACTTCAGGGGCTAAGAAAGCTTAGTCTCCACGATAACCAAATTGGTGGTTCGATCCCTTCATCACTGGGAGTTCTTCTCAATCTGAGAGGGGTTCAACTCTTCAACAATAGGTTCACAGGCTCCCTCCCTCCTTCGTTAGGTTCATGTCCTTTGCTTCAGTCTTTAGACCTCAGTAACAATCTGCTCAGCGGGACAATCCCGATCAGCCTTGGGAATGCCACTAAGCTTTATTGGCTTAACTTGAGCTTTAATTCCTTCTCTGGCCCAATACCAACAACCTTAACTCGCTTAACTTCTCTCACTTACATATCTCTTCAACACAACAATCTCTCGGGTTCTATTCCTAACTCGTGGGGTGGTAGCTTCAGGAACCATGTCTTTCGCCTCCAAAATCTGATCCTAGATTATAACTTCTTTAGTGGCACCATTCCTGCTTCTTTGGGCAACTTGAGTGAACTCACAGAGATTTCTCTCAGTCATAACCAGCTTAGAGGACCTATCCCAAATGAAATTGGAAGCCTTTATAGACTTAAGACGGTAGATTTTTCTAGTAATTCATTGAACGGAAGCTTGCCCGCCACTCTCTCTAATGTGTCCTCTCTCACTCTCTTGAATGTAGAGAACAACCACCTAGGTAATCAAATCCCAGAAGCCTTGGGCAGATTGCACAATCTATCTGTTCTGGTTCTGAGCAGAAACCAATTCAGTGGCCATATTCCTCAGAGTATTGGAAACATGTCAAAGCTTACACAGCTTGATTTGTCAATGAATAATCTCAGTGGAGAAATTCCAGCATCCTTTGAAGATCTGAGTGGTCTTAATTTCTTCAACGTTTCTCATAACAACCTCTCTGGTCCGGTTCCAGCCCTACTTGGGCATAAATTTAATTCAAGCTCATTTGTGGGAAATATTCAGCTATGTGGATATAGCCCTTCAACCCCATGTCCCTCGCCAGCTCCTTTTGGTTCACCTAAAGAAAAATCAGAAAACCATCGACACAAAAAACTAGGCACCAAAGACATAATTCTCATAGTAGCAGGAGTGCTCCTTGTTGTCCTGGTAACACTTTGCTGCATTCTGCTATTCTGCCTGATCAGAAAAAGAACAGCATCGAATGCAGAGGGTGGCCAGGCCACAGGGAGAGCATCTGCATCTGCTGCCACGACAGAAAAAAGAGTCCCTCCTGTCGCAGGTGAAGCTGAAGCTGGTGGTGGTGAGGCCGGAGGTAAACTAGTCCACTTTGATGGACCATTGGCTTTTACAGCTGATGATCTCTTGTGTGCAACAGCAGAGATAATGGGAAAGAGTACGTATGGAACTGTTTACAAGGCTACATTAGAGGATGGAAGTCAAGCTGCAGTTAAACGATTGAGGGAAAAGATTACGAAAGGTCAAAAAGAATTCGAATCTGAAGTTAGTATTATAGGAAGAATTCGACACCCAAATCTTCTGGCATTGAGAGCCTATTACTTGGGACCCAAAGGAGAAAAGCTTCTAGTATTTGATTACATGCCTAAGGGAAGTCTTGCTTCTTTCCTACACGCTCGTGGGCCCGAAACAGCCATTGATTGGCCAACAAGGATGAAAATAGCGCAGGGAATGGCTCGTGGCTTGCTATACCTTCATTCCAATGAAAATATTATTCACGGAAACCTTACGTCCAGCAATGTGCTGCTGGATGAGTATACGAATGCTAAAATAGCTGATTTTGGCCTTTCTCGGTTGATGACAACTGCTGCTAATTCTAACGTGATTGCCACTGCTGGGGCATTGGGATACCGAGCACCTGAGCTCTCGAAGCTTAAGAAAGCCAACACAAAAACTGACGTATACAGTCTTGGTGTCATCTTGTTAGAACTCCTAACGGGGAAGCCACCTGGTGAGGCTTTGAATGGCGTGGATTTACCTCAGTGGGTTGCCTCCATTGTCAAAGAGGAGTGGACAAATGAAGTTTTCGATGTAGAGTTGATGAGAGATGCTTCAACATATGGCGACGAAATGCTGAACACGTTGAAGCTTGCTTTGCACTGTGTTGATCCTTCTCCATCAGCACGACCAGAAGTCCAGCAAGTCCTTCAGCAGCTTGAAGAGATTAGACCGGAGATATCAGCCAGTTCGGGTGACGATGGAGCCATCCCTTCCACCAGTGAATGA 2316 0.4516 MNYSILVQIXSWNDSGYGACSGGWVGIKCAQGQVIVIQLPWKGLKGRITERIGQLQGLRKLSLHDNQIGGSIPSSLGVLLNLRGVQLFNNRFTGSLPPSLGSCPLLQSLDLSNNLLSGTIPISLGNATKLYWLNLSFNSFSGPIPTTLTRLTSLTYISLQHNNLSGSIPNSWGGSFRNHVFRLQNLILDYNFFSGTIPASLGNLSELTEISLSHNQLRGPIPNEIGSLYRLKTVDFSSNSLNGSLPATLSNVSSLTLLNVENNHLGNQIPEALGRLHNLSVLVLSRNQFSGHIPQSIGNMSKLTQLDLSMNNLSGEIPASFEDLSGLNFFNVSHNNLSGPVPALLGHKFNSSSFVGNIQLCGYSPSTPCPSPAPFGSPKEKSENHRHKKLGTKDIILIVAGVLLVVLVTLCCILLFCLIRKRTASNAEGGQATGRASASAATTEKRVPPVAGEAEAGGGEAGGKLVHFDGPLAFTADDLLCATAEIMGKSTYGTVYKATLEDGSQAAVKRLREKITKGQKEFESEVSIIGRIRHPNLLALRAYYLGPKGEKLLVFDYMPKGSLASFLHARGPETAIDWPTRMKIAQGMARGLLYLHSNENIIHGNLTSSNVLLDEYTNAKIADFGLSRLMTTAANSNVIATAGALGYRAPELSKLKKANTKTDVYSLGVILLELLTGKPPGEALNGVDLPQWVASIVKEEWTNEVFDVELMRDASTYGDEMLNTLKLALHCVDPSPSARPEVQQVLQQLEEIRPEISASSGDDGAIPSTSE 771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1515g00008 771 Pfam Leucine rich repeat 278 337 IPR001611 GO:0005515
Vium1515g00008 771 ProSiteProfiles Protein kinase domain profile. 481 756 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1515g00008 771 MobiDBLite consensus disorder prediction 429 458 - -
Vium1515g00008 771 MobiDBLite consensus disorder prediction 750 771 - -
Vium1515g00008 771 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 177 372 - -
Vium1515g00008 771 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 102 176 - -
Vium1515g00008 771 FunFam Leucine-rich repeat receptor-like protein kinase 466 557 - -
Vium1515g00008 771 SUPERFAMILY Protein kinase-like (PK-like) 485 753 IPR011009 -
Vium1515g00008 771 Gene3D Ribonuclease Inhibitor 178 373 IPR032675 -
Vium1515g00008 771 SMART LRR_typ_2 55 79 IPR003591 -
Vium1515g00008 771 SMART LRR_typ_2 252 276 IPR003591 -
Vium1515g00008 771 SMART LRR_typ_2 151 174 IPR003591 -
Vium1515g00008 771 SMART LRR_typ_2 204 228 IPR003591 -
Vium1515g00008 771 SMART LRR_typ_2 300 323 IPR003591 -
Vium1515g00008 771 PRINTS Leucine-rich repeat signature 204 217 - -
Vium1515g00008 771 PRINTS Leucine-rich repeat signature 106 119 - -
Vium1515g00008 771 FunFam Leucine-rich repeat receptor-like kinase 2 101 - -
Vium1515g00008 771 Pfam Protein tyrosine and serine/threonine kinase 484 749 IPR001245 GO:0004672|GO:0006468
Vium1515g00008 771 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 183 752 - -
Vium1515g00008 771 CDD STKc_IRAK 487 752 - -
Vium1515g00008 771 FunFam Pollen receptor-like kinase 1 558 762 - -
Vium1515g00008 771 Gene3D Transferase(Phosphotransferase) domain 1 559 763 - -
Vium1515g00008 771 SUPERFAMILY L domain-like 28 361 - -
Vium1515g00008 771 Gene3D Ribonuclease Inhibitor 102 177 IPR032675 -
Vium1515g00008 771 Gene3D Ribonuclease Inhibitor 4 101 IPR032675 -
Vium1515g00008 771 Gene3D Phosphorylase Kinase; domain 1 487 558 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1515g00008 Vium-Chr1515 63552 67188 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1515g00008 9 754 Receptor kinase-like Gene Family AT3G51740 65.073 0.0 926
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vium1515g00008 PK_Tyr_Ser-Thr 4.1e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1515g00008 - - gmx:100783979 1271.14