Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1515g00004 ATGGGTGCTTATGATCAAGTTTCTGTGCGGCCTTTGGATTCTTCTAGAAAGAGGAAAAGTAGGAGCAGAGGGGATGGTTCTAGATCTGTTGCTGAGACCATTGCAAAGTGGAAGGAATACAATGAGCATCTTTATTCCGGCAAAGATGATGGTAGATCAACTCGGAAGGCACCAGCTAAAGGGTCAAAGAAAGGATGTATGAAAGGGAAAGGAGGACCCCAGAACTATGAGTGTAACTACAGAGGGGTTAGGCAGAGAACTTGGGGGAAATGGGTGGGTGAGATTAGGGAGCCAAATAGAGGGAGTAGGCTTTGGTTAGGAACCTTTCCTACTGCCCAAGAAGCTGCTCTTGCCTATGATGAAGCTGCTAGAGCCATGTATGGTCCATGTGCACGCCTCAACTTCCCCCACATCTCAGATTATGCTTCTGTCAGGGAATCGTTTAAGGACTCTTTCTTGGCTGCTTCATCTTCATGTTCTTCGACAACATCGGACACTACTACTACTACTACGTCCAATCGATCAGAGGTCTGTGCAGCTGAGGATGCTAAGGAGAATATTCTACCTGTCCTTGATAAGGCCAACCGTAATGATTGTCACAAGGCTTATGAACATGCCTCACCAACTAGCAGAATGAAGCTAGAGCCGAAGGATGAGGCTGTGGATCGCCTAGACCCGGGGGCTGGAGAAGGAATACATCATGCTGAGCAGGCAGAGGATGTAAATGAAGACCAGATGGACTTTTCGTGGATTGATGCTTTGGATTTTAATAATGATGATTACTCCAAGAGCTTTTCCAATGATGAGTTATTTCAGGTGGATGAACTTTTGGGGCTAATAGATAATAACCCAGTGGATGACTCTGCGTTGATGCAATGTTTGGATTTTGGACAAACAGGATTTCCTGGAGATAGTAATCCTCAGCTTGATAATACGTCATCAAGCTTTGTTTATCAGTTGCAAAATCCAGATGCCAAGTTGCTGGGAAGTTTGCCCCATATGGAACAGACACCATCTGGTTTTGATTATGGATTAGATTTCCTGAAACCAGTTGTACCAGAGGACTATAATGGTGTAGGGGAAGAACCGCAATTTCTTAACTTGGACGATGTTCTGAATCATGATTCAAAGGACATGCTAGAAAGCAAGGAATGA 1155 0.4459 MGAYDQVSVRPLDSSRKRKSRSRGDGSRSVAETIAKWKEYNEHLYSGKDDGRSTRKAPAKGSKKGCMKGKGGPQNYECNYRGVRQRTWGKWVGEIREPNRGSRLWLGTFPTAQEAALAYDEAARAMYGPCARLNFPHISDYASVRESFKDSFLAASSSCSSTTSDTTTTTTSNRSEVCAAEDAKENILPVLDKANRNDCHKAYEHASPTSRMKLEPKDEAVDRLDPGAGEGIHHAEQAEDVNEDQMDFSWIDALDFNNDDYSKSFSNDELFQVDELLGLIDNNPVDDSALMQCLDFGQTGFPGDSNPQLDNTSSSFVYQLQNPDAKLLGSLPHMEQTPSGFDYGLDFLKPVVPEDYNGVGEEPQFLNLDDVLNHDSKDMLESKE 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1515g00004 384 CDD AP2 78 137 IPR001471 GO:0003700|GO:0006355
Vium1515g00004 384 FunFam Ethylene-responsive transcription factor 2 78 137 - -
Vium1515g00004 384 PRINTS Ethylene responsive element binding protein signature 102 118 IPR001471 GO:0003700|GO:0006355
Vium1515g00004 384 PRINTS Ethylene responsive element binding protein signature 80 91 IPR001471 GO:0003700|GO:0006355
Vium1515g00004 384 MobiDBLite consensus disorder prediction 1 31 - -
Vium1515g00004 384 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 15 341 - -
Vium1515g00004 384 Gene3D AP2/ERF domain 79 138 IPR036955 GO:0003700|GO:0006355
Vium1515g00004 384 ProSiteProfiles AP2/ERF domain profile. 79 136 IPR001471 GO:0003700|GO:0006355
Vium1515g00004 384 MobiDBLite consensus disorder prediction 45 70 - -
Vium1515g00004 384 MobiDBLite consensus disorder prediction 11 26 - -
Vium1515g00004 384 SMART rav1_2 79 142 IPR001471 GO:0003700|GO:0006355
Vium1515g00004 384 SUPERFAMILY DNA-binding domain 79 137 IPR016177 GO:0003677
Vium1515g00004 384 Pfam AP2 domain 78 128 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1515g00004 Vium-Chr1515 27733 30071 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1515g00004 16 369 AP2-EREBP Transcription Factor Family AT2G40340 40.278 8.69e-72 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vium1515g00004 AP2 3.9e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1515g00004 - K09286 gmx:100800134 563.148