Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1515g00002 ATGGGGAACAGAAAAAGACGGTTAGATCAAATCAAGCATCCATTCAATTCTCACCCCTTTGAAGCAGTTGCCTTTGGATCATGGCAAGCTGTGGAATTCATAAAGATTGAGGCAGGAACTATGTCTATACATTTTGTAGATAATCATTATATGGCTATGGAAAAAGGACCTTTGTCAGACATTCGGATAAGGTCAAGGAAAGCTACTTTATCAGATTGCTCCCGTTTTCTGCGACCTGGAGTTGACATATGTGTGCTATCTGCCCCTCAACAATCTAATGATTCAGATGCAGTTGTTATGGATCCTGTTTGGATGGATGCTAAAATAAACTCTGTACAAAGAAAACCTCACGACTCTGAGTGCTCCTGTCAGTTTTATGTCAATTTCTATGTTCATCAAGGTTCACTTGGTGCAGAGCTAAGAACTCTTAACAAGGAGATTAAAGTTATTGGAATCAAACAAATATCCATTCTCCAAAAACTTGACAATATTGCCTGTGAAGATCAGCCCTATCGGTGGGCATCATCTGAGGACTGTTCCATGATATCACATACTAAATTACTTTTGGGCAAAGTGTTATGTGATCTTTCATGGTTAGTTGTTACCTCAGCTTTAAAGAAGATTTCATTTTGCCTGAGATGTCTAGAAGAAAAGCTAGTGTATCAAATTTTGGGAAGAGATACTGATAGCAGTTCATTGAATAAAGATTTTCACATTGATGTTGTGAATTTCAAAACAGAAAGTGGCAGTTTAGTACCCTTTGTTTCTCAAGTAGCTACACCTATAATTAAGAGGATTGATCACGTACAGGAATCCCATGAAGATGAACTATTGCTATCTTATTATGTTGAGGGCTTGCGGCGTTCTAAGCGTAGGAATGTACAACCAGAACGTTACATTGGTAGTGTTAATGTTGCTTCCGAGATTGATGTTGGTTCTTTCAGAAACAGACCACCAGTGAAGATAGACACATGGAAAGTAGAGGACGACGAAGAACTGCATATACCATTAGCATGCTTGTTTGGTTTGCAGAAGAACACTCCAGAAGGGGTTAATGAAAATCATCAAAAGGAGGCAAGCACCTGCCGGGAGCTTGTGATGCATAAGAGGAGAATGACTGCTAACCAGGAGGTAAAGTCAGGAGAAAATTATCATAATGAAGATCCAAATCGACTTGCTATTGTTCCTCTTCCCGATCAAGATGAACCGTTACTTGTTGAACATTGTGATGATTTATATGAAAAGGTTACTAGAAGTTATGGTCATGAATCCCCCGAACATTATTCCAAATATTATGATCTAACAAGTACCCGTAATAAATCGAAGAAGAACAATGATAAATTGTTAGCTTTTGAGACTAATAACCATCCTGCTAAATCAGATGATGTAGAAAAGACTGATGATTTGTCATTGAGATATCATTATAGTTATGGTGTCCCCAAGTCAAAGAGGAAGAGTTTAAGTGGTTTAGATGATTTAGTAGATCTTGGAAATAAATGGGAAGGGATTAGATCCAATAAAGAAGTTCAAAAGAAAAAATATCATGCATCGTATTCAAGAAGTAGAAATCATGGAGAAGAAAAAAGGTACAGATATAAAGACAGAACCTTAAATGCAGCTGCCTACAAGGATTTGATAAATTCGTACTTAAAGAATATTAATACAAAATCTACTCAAGAAGAACCATCTATTACTGACCAGTGGAAGGAAAACAATACAACTAGTAGCATTGGGCAAAAGACAGAAACAGAAAAGCCTGATGAAGAGGATGCAGAAGAAGTATCTGAAATGGATATGTTGTGGAGAGAACTGGAAGTGTCATTGGCGTCATGCTATCTAGAAGAGGATTCAAATGCTGCTACTGTCACTGAGACTGTGGAAAAGCCGAACCAAGGCTGTCCACATGATTTCAGAATGAATGAAGAAATTGGAATTTACTGCTATAGATGTGGCTTTGTGAGAACTGAGATCAAATATATTACGCCACCCTTTATTCAACATTCTTCATGGCACCAAGAGGAGAAGCACAGTGCTGAAGAAGATTCACGAACAAAGGTTGATGAGGATGATGACTTGGATCTTTTCCCCGCCCTAGAATCCCCTAAGGGACCTGTGACTCAAGAAAATGATAACGTTTGGGCATTGATTCCCGAACTTAGAACAAAATTGCATGCTCATCAGAAGAAAGCCTTTGAGTTTCTTTGGAAAAACATTGCAGGGTCAATGGAACCCAGACTTATGGAAGCAGCATCCAAAAGAATAGGTGGCTGTGTGGTATCTCATACTCCTGGTGCTGGAAAAACTTTTCTCATCATTGCTTTTCTTGTGAGCTACTTGAAGTTATTCCCAGGGAAGAGACCTCTTGTTCTTGCTCCAAAAACAACCCTCTATACTTGGTACAAAGAATTTATCAAGTGGGATATTCCTATACCAGTGTATCTGATTCATGGACGTAGAACATACCGGGTATTCAAGCAGAAATCATCACCGGTTGTTCTTCCTGGAGTTCCCAAGCCCACTGATGATGTAAAGCATGTTTTGGATTGCCTTGAGAAGATACAAAAGTGGCATTCACACCCGAGTGTTCTGATAATGGGTTATACTTCATTTTTAACATTGATGCGTGAGGATTCAAAGTTTGCACACAGAAAATACATGGCTAAAGTGCTGAGGGAAAGCCCGGGGATCTTGGTTCTGGATGAAGGGCACAACCCCAGAAGCACTAAATCAAGGCTAAGAAAGGCTCTGATGAAAGTTCAAACAAAATTGAGAATACTGCTTTCTGGTACATTGTTTCAGAACAATTTCTGTGAATACTTCAACACTCTGTGCTTGGCAAGACCAAAGTTCATTCATGAAGTACTGAAAGCATTAGACTCCAAATACAGAAGGAAAGGAAAAGTGGCGAAAAAGGCAAGTCATTTATTAGAGTCACGGGCCAGAAAATTCTTCTTAGACAAAATTGCTAAGAAGATTGACTCTGATAAAGGTAGGGAGAGGCAGCAGGGACTAAAGATGTTGAGAAATGTGACAAATGGATTCATAGATGTTTAAGAAGGTGGGAGCTCTGACGGTCTACCTGGTTTACAAATTTATACATTGTTAATGAATTCAACCGATACACAGCATGAAATTTTGCTTAAACTACACAAGAAAATGGCCAAGTGCAATGGTTACCCTCTGGAATTAGAGCTTATGATAACTCTTGGTTCAATACATCCCTGGCTGGTGAAAACAGCAGTGTGTGCTGAGAAGTTTTTCACTTCTGAGCAATTGATGGAGCTAGAAAAATGCAAATTTGACCTGAAACTAGGGTCCAAGGTAAGATTTGTTTTGAGCCTTATCTACCGTGTTGTAAAAAACGAGAAGGTTCTGATATTTTGCCACAACATTGCACCAGTGAAGCTATTTGTGGAATACTTTGAGAAGTACTTTGGATGGCTAAGAGGTAGAGAAGTGTTGGTACTAACTGGGGAATTAGAACTGTTTGAAAGGGGGAAAGTAATAGACAAGTTTGAGGAACCTGGTGGAGTAGCAAAGATACTTCTTGCTTCTATTACAGCTTGTGCTGAAGGCATTAGTTTGACAGCAGCTTCACGAGTTATTATGTTGGATTCAGAGTGGAATCCTTCAAAAACCAAGCAAGCCATTGCTCGGGCCTTTCGGCCTGGTCAGCAGAAAGTTGTTTATGTGTATCAGCTTTTAGTCACAGGCTCATTGGAGGAAGATAAGTACAGAAGAACCACTTGGAAAGAATGGGTTTCAAGCATGATCTTCAGTGAGGCCTTTGTGGAAGACCCTTCTCAGTGGCAAGCTGAGAAGATTGAAGATGATATACTCAGAGAAATGGTTGCTGAAGATAGGTCTAAATCATTCCACATGATCATGAAGAATGAAAAAGCTTCTTCTACCAACAAATAA 3921 0.392 MGNRKRRLDQIKHPFNSHPFEAVAFGSWQAVEFIKIEAGTMSIHFVDNHYMAMEKGPLSDIRIRSRKATLSDCSRFLRPGVDICVLSAPQQSNDSDAVVMDPVWMDAKINSVQRKPHDSECSCQFYVNFYVHQGSLGAELRTLNKEIKVIGIKQISILQKLDNIACEDQPYRWASSEDCSMISHTKLLLGKVLCDLSWLVVTSALKKISFCLRCLEEKLVYQILGRDTDSSSLNKDFHIDVVNFKTESGSLVPFVSQVATPIIKRIDHVQESHEDELLLSYYVEGLRRSKRRNVQPERYIGSVNVASEIDVGSFRNRPPVKIDTWKVEDDEELHIPLACLFGLQKNTPEGVNENHQKEASTCRELVMHKRRMTANQEVKSGENYHNEDPNRLAIVPLPDQDEPLLVEHCDDLYEKVTRSYGHESPEHYSKYYDLTSTRNKSKKNNDKLLAFETNNHPAKSDDVEKTDDLSLRYHYSYGVPKSKRKSLSGLDDLVDLGNKWEGIRSNKEVQKKKYHASYSRSRNHGEEKRYRYKDRTLNAAAYKDLINSYLKNINTKSTQEEPSITDQWKENNTTSSIGQKTETEKPDEEDAEEVSEMDMLWRELEVSLASCYLEEDSNAATVTETVEKPNQGCPHDFRMNEEIGIYCYRCGFVRTEIKYITPPFIQHSSWHQEEKHSAEEDSRTKVDEDDDLDLFPALESPKGPVTQENDNVWALIPELRTKLHAHQKKAFEFLWKNIAGSMEPRLMEAASKRIGGCVVSHTPGAGKTFLIIAFLVSYLKLFPGKRPLVLAPKTTLYTWYKEFIKWDIPIPVYLIHGRRTYRVFKQKSSPVVLPGVPKPTDDVKHVLDCLEKIQKWHSHPSVLIMGYTSFLTLMREDSKFAHRKYMAKVLRESPGILVLDEGHNPRSTKSRLRKALMKVQTKLRILLSGTLFQNNFCEYFNTLCLARPKFIHEVLKALDSKYRRKGKVAKKASHLLESRARKFFLDKIAKKIDSDKGRERQQGLKMLRNVTNGFIDVXEGGSSDGLPGLQIYTLLMNSTDTQHEILLKLHKKMAKCNGYPLELELMITLGSIHPWLVKTAVCAEKFFTSEQLMELEKCKFDLKLGSKVRFVLSLIYRVVKNEKVLIFCHNIAPVKLFVEYFEKYFGWLRGREVLVLTGELELFERGKVIDKFEEPGGVAKILLASITACAEGISLTAASRVIMLDSEWNPSKTKQAIARAFRPGQQKVVYVYQLLVTGSLEEDKYRRTTWKEWVSSMIFSEAFVEDPSQWQAEKIEDDILREMVAEDRSKSFHMIMKNEKASSTNK 1306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1515g00002 1306 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1110 1271 IPR001650 -
Vium1515g00002 1306 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 53 1302 IPR044567 GO:0080188
Vium1515g00002 1306 MobiDBLite consensus disorder prediction 557 596 - -
Vium1515g00002 1306 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 674 962 IPR027417 -
Vium1515g00002 1306 Gene3D - 1079 1298 IPR027417 -
Vium1515g00002 1306 CDD DEXHc_ATRX-like 723 954 - -
Vium1515g00002 1306 SMART helicmild6 1139 1224 IPR001650 -
Vium1515g00002 1306 Pfam SNF2-related domain 733 992 IPR000330 GO:0005524|GO:0140658
Vium1515g00002 1306 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1025 1286 IPR027417 -
Vium1515g00002 1306 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 748 949 IPR014001 -
Vium1515g00002 1306 MobiDBLite consensus disorder prediction 557 580 - -
Vium1515g00002 1306 Pfam Helicase conserved C-terminal domain 1107 1223 IPR001650 -
Vium1515g00002 1306 SMART ultradead3 719 954 IPR014001 -
Vium1515g00002 1306 CDD SF2_C_SNF 1099 1235 - -
Vium1515g00002 1306 Gene3D - 701 991 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1515g00002 Vium-Chr1515 8210 15102 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1515g00002 1149 1242 RAD5 or RAD16-like Gene Family AT5G43530 41.489 1.60e-11 67.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vium1515g00002 SNF2_N 5.3e-17 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1515g00002 K10875 - gmx:100811703 2166.73