Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium15158g00003 ATGGAGAATCGGAAGACATCAGCGTACTACGAGAACAGAGCGGTGCAGTTCGGGGTAGTGAGCACCGATTGGCTTGCTCAGGCTCAGTCCGCCACTGTCCCTCGTACCCCTTCTCCTCCTCCTCCATCTCCTCCTCTTCCTCCTTCCCACAATGACGCCGACGAACCCTTCTCCGTCATCCAGGAGTTCGACACCTGGCGCAAGCACCCCGATTTGGCGGAGGCCGTCGCCGCCATTCGTGCCTTGGCCGCCGTTATCCGCTCCAGCAAGGCCACCACCATGATGCAGCTCGAAATCCAACTCAAAAGCGCCTCTGATTCCCTCAAATGTTGGGATACAACCTCAATCTCCTTAACCGCCGCCTGCGATCTCTTCATGCGATACGTCACCAGGACTTCCGCTCTCGAGTACGAAGACTTCAATTCCGCCAAGTCTCGCTTGCTCGAACGCGCCGATAAGTTCGGCGAAATCTCCTTCAAGGCTCGCGAAATCATTGCAATGCTGAGCCAGGATTTTATATTCGACGGTTGCACAATTCTTGTTCACGGTTTCTCCAGAGTCGTGCTTCAGATTCTCAAACTCGCTGCACAGAATAACAAGCTCTTTAGAGTCTTGTGCACAGAGGGGAGACCAGATAGAACGGGTTTGCGGTTTTCCAATGAGCTGGCGAAGCTTGATGTGACTGTGAAACTTGTTATAGACTCTGCAGTGGCTTATACTATGGATGAGGTTGACATGGTGTTTGTTGGGGCAGATGGAGTTGTTGAAAGTGGTGGTATAATCAACATGATGGGAACTTACCAAATTGCAATGGTGGCTAAGAGTATGAACAAGCCAGTTTATGTGGCTGCTGAAAGTTACAAGGGACAAAGAGAATCGGTATTTTTTCTATTGTGCAGCACGTATCAAAATATTAGGAAATGTTTACAAAATATTGTTTTTGACATGTGTTTCGAAACATTAGAACATATCCCAAATGCAAATGGCAAAAGTAAGTTTATTCTTTTTTAG 1011 0.4827 MENRKTSAYYENRAVQFGVVSTDWLAQAQSATVPRTPSPPPPSPPLPPSHNDADEPFSVIQEFDTWRKHPDLAEAVAAIRALAAVIRSSKATTMMQLEIQLKSASDSLKCWDTTSISLTAACDLFMRYVTRTSALEYEDFNSAKSRLLERADKFGEISFKAREIIAMLSQDFIFDGCTILVHGFSRVVLQILKLAAQNNKLFRVLCTEGRPDRTGLRFSNELAKLDVTVKLVIDSAVAYTMDEVDMVFVGADGVVESGGIINMMGTYQIAMVAKSMNKPVYVAAESYKGQRESVFFLLCSTYQNIRKCLQNIVFDMCFETLEHIPNANGKSKFILF 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium15158g00003 336 SUPERFAMILY NagB/RpiA/CoA transferase-like 68 291 IPR037171 -
Vium15158g00003 336 PANTHER TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT ALPHA 19 288 - -
Vium15158g00003 336 FunFam Translation initiation factor eIF-2B subunit alpha 55 157 - -
Vium15158g00003 336 Gene3D - 55 157 IPR042528 -
Vium15158g00003 336 MobiDBLite consensus disorder prediction 34 51 - -
Vium15158g00003 336 MobiDBLite consensus disorder prediction 28 54 - -
Vium15158g00003 336 Pfam Initiation factor 2 subunit family 70 288 IPR000649 GO:0044237
Vium15158g00003 336 Gene3D - 160 328 IPR042529 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium15158g00003 Vium-Chr15158 11940 18815 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium15158g00003 7 288 Eukaryotic Initiation Factors Gene Family AT1G72340 75.887 1.19e-145 412
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium15158g00003 K03239 - gmx:102669842 480.715