Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium15154g00003 ATGGCGAGAGTTTTCTGGACTGCCATTGCTATAGCACTAGTTTTCAGCAGCTGGGTTGATGGGTTCGAAGGTTATTATGAACATCAATTCAATGAAACAGAGTTGTCTTTATTAGAGGCTCATGAAGCTTCCTTATCCTACGCCGGGAGTAATCTTCTGCTGGTAGGACTCACCCTTGTCCAAAATGCTGCTGCTAAAGGAGCAGTTTGCTTGGATGGAACATTACCCGGTTATCATTTGCACCGGGGATATGGATCAGGAGCAAATAGCTGGCTTATTAATTTAGAGGGTGGTGGATGGTGTAATAATATTAGAACATGTGTTTATCGCAAGAAAACCCGGCGTGGATCATCAGATTTCATGGAAAAAGAGATATATTTTACTGGAATATTGAGTAATAAGGCTGAAGAAAATCCAGATTTTTTCAACTGGAATAGAGTAAAGCTTCGTTATTGTGATGGTGCCTCATTTGCTGGGGACAGTGAAGATGAGACTGCTGAACTGCAATTCAGAGGACAACGTATTTGGACAGCTGCTATGGAAGATTTGATGTCAAAGGGAATGCGTTTTGCCGATCAGGCTCTTCTTTCGGGATGCTCCGCAGGTGGCTTAGCTACTATTATTCATTGTGATGAATTTCGTGGTCTCTTTCCAATGACCACCAGAGTCAAATGTCTAAGCGATGCTGGGTTGTTTCTTGATGCGATTGACGTATCTGGCGGCCATACACTGAGGAACTTATACAGTGGTGTTGTAGGATTGCAGGGAGCGCAGAAGAATCTGCCTCAAATTTGTACTAATCACCTTGATCCCATCTCGTGCTTCTTTCCTCAAAACTTGATTGCCAGTGTTAAGACCCCGCTATTCATTCTTAATGCTGCTTATGATTCATGGCAGATCCAGTCCAGTTTAGCTCCTCCATCTGCAGATCCGCATGGCTATTGGCGTAACTGTAGATTAAATCATGCTAAATGTACTGCACCGCAAATCCAATATCTGCAAGGATTCAGGAATCACATGCTGAATGTTATCAAAGACTTCGCAAGAGCAAACCAGAATGGCTTGTTTATTAACTCGTGTTTTTCTCACTGCCAAACTGAGAGACAGGATACATGGTTTGCTGACAATTCTCCTGTTATTAGGAACAAGGCTATTGCTCTGGCTGTTGGAGATTGGTATTTCGATCGAGCAGGTGTTAAGGTTATTGATTGTCCTTACCCTTGTGATAATACGTGCCATCATCTGATTTTCAGATGA 1257 0.4264 MARVFWTAIAIALVFSSWVDGFEGYYEHQFNETELSLLEAHEASLSYAGSNLLLVGLTLVQNAAAKGAVCLDGTLPGYHLHRGYGSGANSWLINLEGGGWCNNIRTCVYRKKTRRGSSDFMEKEIYFTGILSNKAEENPDFFNWNRVKLRYCDGASFAGDSEDETAELQFRGQRIWTAAMEDLMSKGMRFADQALLSGCSAGGLATIIHCDEFRGLFPMTTRVKCLSDAGLFLDAIDVSGGHTLRNLYSGVVGLQGAQKNLPQICTNHLDPISCFFPQNLIASVKTPLFILNAAYDSWQIQSSLAPPSADPHGYWRNCRLNHAKCTAPQIQYLQGFRNHMLNVIKDFARANQNGLFINSCFSHCQTERQDTWFADNSPVIRNKAIALAVGDWYFDRAGVKVIDCPYPCDNTCHHLIFR 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium15154g00003 418 PANTHER NOTUM-RELATED 41 414 IPR004963 GO:0016787
Vium15154g00003 418 Pfam Pectinacetylesterase 53 397 IPR004963 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium15154g00003 Vium-Chr15154 13325 17947 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium15154g00003 1 418 Carbohydrate Esterase AT1G57590 66.667 0.0 602
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium15154g00003 K19882 - gmx:100782401 799.275