Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium15131g00007 ATGCAAGCTTTCTATGGAGAAAGAACAACGTTTGTTACTTGTTACGTAGGTAAATCACAATTCAAAAGATTATTTAAGTGGCCCATACTATTGACAGCAAAAGTTAGTTCCTCCAAGAAAGTGAAGAATTCCGAAAAACATTCCAACAATTCATCCGTGAATGTGCCTTTAGTAGCCGATAATGGCGAGTTGGCTCAGCATAAAACCATAACCTATCCTCCTTCTGCACAAGACACTGTATCCTTCTTTCACACTTGTCTTAACGGACTCAATGCAATAGCAGGTGTAGGTATACTCTCAGTTCCTTACGCTCTTGCATCTGGAGGATGGTTAAGCTTGGTTCTTTTGTTTGGAATTGCCACTGCAGCACTTTACACGGGCACGTTGATAAAAAGATGCATGGATATGAATACGAATATCAGAAGCTATCCTGATATAGGTGAACTTGCATTTGGAAAGACAGGAAGGCTAATAGTGTCAGTATCCATGTATACTGAACTATATCTAGTTTCAATAGGATTCTTGATTCTAGAAGGTGATAACTTGAGTAACTTGTTCCCCAATGCGAAGGTTCAGATAGCTGGCTTAGCAATTGCAGGGAAACAATTCTTTGTGATATTGGTTTCCCTTATCATCTTGCCCACAGTTTGGTTGGACAACTTGAGTCTACTCTCTTATGTATCTGCAAGTGGAGTCTTCGCTTCTGTTCTCATCATCCTTTCAATAACATGGACTGCAACATTTGATGGAGTTGCTTTTCATCATAAAGGAACTCTTGTCCGTTGGAATGGTCTCCCCACAGCTGTTAGCTTGTATGCCTTCTGTTATTGTGCGCATCCTGTCTTTCCCACCTTGTACAATTCCATAAGAAACAAACATCATTTCACTAATGTCTTAATTGGCTGCTTTCTCTTAACCACTGTGGGCTATGCATCCATGGCTATAGTGGGTTATTTAATGTTTGGTGAGGAGGTTGAGTCACAAGTAACACTGAACCTGCCTCTGAACAAAGTTAGCTCAAAAGTAGCAATATACACAACGTTGATGAATCCCATATCGAAGTTTGCTTTGATGGCAACACCTATTACGAATGCTTTAAAAGACTTGCTTCCAAGGAGGTACAAGAATAGGGTGACGAGCATCTTAGTTAGCACAGTGTTGGTAATGAGCACCACCGTTGCTGCCCTTGCTGTTCCTTTCTTTGGGTCTCTGATGTCACTGGTTGGAGCCTTTCTAAGTGTCACAGCTTCTATTCTGCTTCCATGCTTGTGCTACTTGAAGATTTCGGGCACTTACAGGAACTTTGGGTGTGAGAGTGTAGTCATAGTGATACTAATAATGGCGGCTTTAGCAATGGCAATATCTGGAACATACACCTCTTTCATGGAAATAGCACACCACCTAGTTCAACTATGA 1416 0.411 MQAFYGERTTFVTCYVGKSQFKRLFKWPILLTAKVSSSKKVKNSEKHSNNSSVNVPLVADNGELAQHKTITYPPSAQDTVSFFHTCLNGLNAIAGVGILSVPYALASGGWLSLVLLFGIATAALYTGTLIKRCMDMNTNIRSYPDIGELAFGKTGRLIVSVSMYTELYLVSIGFLILEGDNLSNLFPNAKVQIAGLAIAGKQFFVILVSLIILPTVWLDNLSLLSYVSASGVFASVLIILSITWTATFDGVAFHHKGTLVRWNGLPTAVSLYAFCYCAHPVFPTLYNSIRNKHHFTNVLIGCFLLTTVGYASMAIVGYLMFGEEVESQVTLNLPLNKVSSKVAIYTTLMNPISKFALMATPITNALKDLLPRRYKNRVTSILVSTVLVMSTTVAALAVPFFGSLMSLVGAFLSVTASILLPCLCYLKISGTYRNFGCESVVIVILIMAALAMAISGTYTSFMEIAHHLVQL 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium15131g00007 471 PANTHER OS05G0424000 PROTEIN-RELATED 88 449 - -
Vium15131g00007 471 Pfam Transmembrane amino acid transporter protein 79 460 IPR013057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium15131g00007 Vium-Chr15131 8940 11000 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium15131g00007 60 464 Amino Acid or Auxin Permease AAAP Family AT3G28960 55.419 8.89e-164 466
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium15131g00007 K15015 - gmx:100794374 661.759