Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1512g00011 ATGAGCAAATCTCTGGCTTTTGTTGCTACAGCCATTTCGACAAGGTTCCGCGTTCCTCTTCCTCAAATTCAATACCGTTTCTACTGTTCTTCACCCTCTCATCCTTCATCCAACAAGCTCTTTGTTGGAGGGTTGTCATGGTCAGTGGACGAGAAGTCGCTCAAAGACGCTTTCTCTTCTTTCGGAGACGTCACCGAAGTGAGGATAGTGTATGATAAAGACAGTGGCAGGTCTAGAGGCTTTGGATTTGTCATTTTTTCAAATGAAGATGATGCAAAATGTGCAAAGGAAGCAATGGATGGAAAGGCACTGTTGGGGAGACCATTGAGGATAAATATTGCACTTGAGAAGGCCCGAGGTGTACCTGTTGTAGTTCCTCGACTTTCAGATATTGGACATTTGAACAGGCGCTAA 414 0.4469 MSKSLAFVATAISTRFRVPLPQIQYRFYCSSPSHPSSNKLFVGGLSWSVDEKSLKDAFSSFGDVTEVRIVYDKDSGRSRGFGFVIFSNEDDAKCAKEAMDGKALLGRPLRINIALEKARGVPVVVPRLSDIGHLNRR 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1512g00011 137 Gene3D - 25 120 IPR012677 -
Vium1512g00011 137 SUPERFAMILY RNA-binding domain, RBD 18 120 IPR035979 GO:0003676
Vium1512g00011 137 SMART rrm1_1 39 112 IPR000504 GO:0003723
Vium1512g00011 137 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 40 110 IPR000504 GO:0003723
Vium1512g00011 137 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 38 116 IPR000504 GO:0003723
Vium1512g00011 137 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 28 118 - -
Vium1512g00011 137 CDD RRM2_NsCP33_like 39 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1512g00011 Vium-Chr1512 49230 54347 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1512g00011 36 117 C2H2 Transcription Factor Family AT2G19380 38.095 1.49e-13 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1512g00011 - - gmx:100810104 232.261