Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium15113g00004 ATGAGGGAGCTATGGAGACAAATGGGATCGTTAATGGCAACTGTGGTGTTCATGTACACCATTTTTGAGCGATTCTTCCCTTCTTCCTTTCGTGACCGTCTTCAGGCCTATGCTCAAAAAGTGGCAAACCATTTCAACCCTTACATCCAAATAACCTTTCCTGAGTTTTCAGGGGAAAGACTGAAGAAAAGTGAAGCATACAATGCCATCCAAATCTACCTCAGTGCAAACTCATCTCAGAGAGCCAAAAAACTCAAAGCTGAAGTGGTGAAGGATAGCCAAAGCCCACTGGTTCTCAGCATGGATGACAATGAAGAGATCACCGATGAGTTCCAAGGTGTCAAAGTGTGGTGGAGTGCAAAAAAAGTAAGCTCCAATCCACAGAGGTACAACCCTTTCTCTTACTACGATTCCTCTGATGAGAAAAGGTTCTATAAGCTCACTTTCCACAGAAGCTACCGTGATATCATCACCATGTCTTACATCAAGCATGTGTTGGAAGAGGGGAAGGAAATTGAGTTGACAAACAGGCAGTTGAAGCTTTACACCAACAATCCCAGCAGTGGTGGGTATGGTTACAAGCAGTCAAAGTGGAGTCACATAGTGTTTGAGAACCCTGCCTCTTTTGAAACACTGGCAATGGATCAGAAAAGGAAGGAAGATATCCTGAAAGACCTTACTAAATTTAAGAAGGGAAAGGAGTATTACTCAAAGATAGGTAAGGCTTGGAAAAGAGGGTATCTTTTGTATGGCCCTCCAGGGACTGGGAAGTCTACCATGATAGCTGCTATTGCTAAGTTCATGAACTATGATGTGTATGATCTTGAGTTGACAGCAGTGAAGGACAACACTGAGTTGAAAAAGTTGTTGATTGAAACTCCAAGTAAGTCTATAACTGTGATTGAGGACATTGATTGTTCTCTTGATCTTACTGGGCAGAGGAAGAAGAAAAAGGAAGAGGTTGATAATGAAGAACAAAAAGATCCTATGAGGAAGAATGAAGAGGAGAGTAGCAAGAGCAGCAAGGTAACTCTATCTGGGTTGCTGAATTTTATTGATGGGATTTGGTCAGCTTGTGGAGGTGAGAGGATCATCATTTTCACCACAAATTATGTGGAGAAACTTGACCCTGCTCTCATCAGGAGAGGGAGGATGGACAAGCACATTGAGATGTCCTATTGTTGTTTTGATGCATTCAAGGTGCTGGCCAAGAACTACTTGGCTGTTGAGTCTCACCTTTTGTTTGGTAGAATTGGGACATTGTTGAAGGAGACAGAAATGTCACCTGCTGATGTTGCTGAGAATCTAATGCCAAAGTCTGAGGATGAAGATGTGGAGACTTGCCTGGAGAATTTGATTAATGCTCTTGAGAAGAACAAGGAGGAGAATGCAAATAAAAAGGAAGAAGAAGAAGCAGAGGAAAATTTGGAGGAGGAGAAAAAAAAGGCAGAAGAAGAAGAACAGAAAGAGTTGGAAGAGGAGAAAGCCAAAGAAGAATCTACTCAGAATAAGGAAATAATCAAAGAAAAAACTAGGGGTGAAGGAAAATCGAAAATGTGTTTGCAAATAACAATCAGTTATTGA 1584 0.4148 MRELWRQMGSLMATVVFMYTIFERFFPSSFRDRLQAYAQKVANHFNPYIQITFPEFSGERLKKSEAYNAIQIYLSANSSQRAKKLKAEVVKDSQSPLVLSMDDNEEITDEFQGVKVWWSAKKVSSNPQRYNPFSYYDSSDEKRFYKLTFHRSYRDIITMSYIKHVLEEGKEIELTNRQLKLYTNNPSSGGYGYKQSKWSHIVFENPASFETLAMDQKRKEDILKDLTKFKKGKEYYSKIGKAWKRGYLLYGPPGTGKSTMIAAIAKFMNYDVYDLELTAVKDNTELKKLLIETPSKSITVIEDIDCSLDLTGQRKKKKEEVDNEEQKDPMRKNEEESSKSSKVTLSGLLNFIDGIWSACGGERIIIFTTNYVEKLDPALIRRGRMDKHIEMSYCCFDAFKVLAKNYLAVESHLLFGRIGTLLKETEMSPADVAENLMPKSEDEDVETCLENLINALEKNKEENANKKEEEEAEENLEEEKKKAEEEEQKELEEEKAKEESTQNKEIIKEKTRGEGKSKMCLQITISY 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium15113g00004 527 Pfam Domain associated at C-terminal with AAA 26 120 IPR025753 -
Vium15113g00004 527 SMART AAA_5 243 395 IPR003593 GO:0016887
Vium15113g00004 527 Gene3D - 197 389 IPR027417 -
Vium15113g00004 527 Coils Coil 307 327 - -
Vium15113g00004 527 FunFam AAA-ATPase ASD, mitochondrial 199 389 - -
Vium15113g00004 527 CDD RecA-like_BCS1 222 391 - -
Vium15113g00004 527 MobiDBLite consensus disorder prediction 460 515 - -
Vium15113g00004 527 ProSitePatterns AAA-protein family signature. 363 382 IPR003960 GO:0005524|GO:0016887
Vium15113g00004 527 Gene3D - 390 454 - -
Vium15113g00004 527 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 99 440 IPR027417 -
Vium15113g00004 527 Coils Coil 449 509 - -
Vium15113g00004 527 Pfam ATPase family associated with various cellular activities (AAA) 248 392 IPR003959 GO:0005524|GO:0016887
Vium15113g00004 527 PANTHER BCS1 AAA-TYPE ATPASE 8 464 - -
Vium15113g00004 527 MobiDBLite consensus disorder prediction 315 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium15113g00004 Vium-Chr15113 24610 26499 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium15113g00004 222 391 Calmodulin-binding Proteins AT3G56690 26.404 7.77e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium15113g00004 - - gmx:100787917 802.742