Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium15111g00006 ATGGAATTCGACACTGTAGATGTTGCTAAGGCATTTTATAATGAATATGCTAGACACATGGGTTTTAGCTCTAAAGTTGGCCCATATGGTCACTCTAAAATTGATGGGGAAAATTATAGGGAGTTTGTATGTGGTAGGGAAGGTTTAAGAAAAGGACTAAATGAAAGTTGCAATGCAATGATTAGGATCGAGCTAAAGAGTCAAAATAAATGGGTGGTAACAAAATTAGTGAAGGAGCATACTCATTCCCTGTTCAGTTCCAGTAAGTCACACAATAATCACCCAAGTAAGCATTTTTCTAGTGTTGGAAGGACAATGCCGGAAACTTATCAAGGAGTGGGTCTTGTTCCTAGTGGTGTTATGTATGTATCTATGGATGGGAATCGTGTTTCGAATCAGAATACTCGTGGGATGAAGAATATTCATACCACTGCTGCTGAACGAAGTCACCCAGTTAAAAATTCCTCATTGATGAATTATACTGTTAGGCCTTCTTTGCAAAACCGGACATTGGGGAGGGACGCTCATAATCTGCTGGAGTACTTCAAGAAGATGCAGGCTGAGAATCCTGGTTTCTTCTATGCTATACAACTTGATGAAGACAATCGAATGTCTAATGTCTTTTGGGCAGATGCAAGATCAAGGACAGCATACAGTTATTACGGTGACACAGTTCATCTTGACACAACTTACAAAGTAAATCAATATAGAGTGCCATTTGCTCCTTTCACTGGGGTAAATCATCATGGTCAAATGGTTTTGTTTGGTTGTGCGCTCCTTTTGGATGATTCTGAGGCATCTTATTTATGGCTGTTGAAGACATTTCTGACGGCAATGAATGATTGTCAGCCTGTCTCTATAACTACTGATCAAGATAGAGCCTTGCAAACTGCAGTTTCTCAAGTTCTCCCACAAACCCGCCACTGTATTAGCAAGTGGCATATCTTGAAAGAAGGTCAAGAAAAGTTGGCTCATGTATGTCTTGTGCATCCAAATTTTCAGGTTGAACTTTATAATTGTATTAACATGACAGAAACCATTGATGAGTTTGAGTCATTTTGGAGTTGTATCATCGAAAAATATGAACTCAGAAGAAATGATTGGCTCCAGTCATTGTATAATGCTCGTGCTCAATGGGTTCCAGCATTCTTTCGCAATTCGTTTTTTGCAGCATTATCTCCTACTCAAGGTTTTGATAGTTCTTTTTTTGATGGTTATGTCAACCAACAGACAACATTGCCATTGTTCTTCAGGCAGTATGAAAGAGCTTTAGAGAGCTGGATTGAGAAGGAAATAGAAGCAGATTTTGAGACAGTTTGCACAACACCAGTTTTGAAGACACCTTCACCAATGGAGAAACAGGTTGCTAATCTTTATACAAGAAAAATATTTTCAAAGTTTCAAGATGAACTTGTTGAAACTTTTGTTTATACTGCGAATAGAATTGAAGGAGATGGACCAAATAGCACATTTAGAGTTGCAAAATTTGAGGATGACCAGAAGGCATACACGGTCTCATTAAACCATTCTGAGTTGAAAGCTAATTGTAGTTGCCAAATGTTTGAGTATTCAGGCATTCTTTGCAGACATATTTTAACAGTTTTCACCGTGACAAATGTACTTACGTTACCACCCCATTACATCTTGAAACGTTGGACAAGAAATGCAAAAAACAGTCCTGGATTGGATGAACATATCGGTGAGTTACATGCACAGGAATCTTTGACAGCAAGATATAGCAATCTATGCAAGGAAGCCATCAGGTACGCTGAGGAAGGGGCAGTAACTGTGGAAACATATAATGCTGCAATAAGTGGTATTAGAGAAGGTGGAAAGAAGGTTGCTAATGTGAAAAGAAGTGTTGCCAAAGTATCTCCTCCTAACAATCAGGCCGGTGGGATTGCATATGATGACAGGAAAACTCCCACTCCAACTTCAGATACAACTCCTCTTTTATGGCCGCGGCAAGATGAGATAACGAGGAGGTTTAATCTTAATGATGCTGGTGGTCCTGTTCAATCAGTTGCTGATCTAAACTTGCCACGGATGGCCCCAGTCTCTCTTCATCGTGATGATGGCCTATCTGAAAACATGGTAGTTCTTCCATGCCTAAAATCAATGACATGGATAATGGAGAACAAAAACTCAACTCCTGGGAATAAAGTAGCTGTTATCAATCTTAAGTTGCAAGACTATAGCAGGGTTCCATCCACAGAATCTGAGGTTAAGTTTCATCTTTCTAGAGTTACTTTGGAACCAATGTTGAAGTCTATGGCTTACATCAGTGAACAGCTCTCAACACCAGCTAATAAGGTTGCAGTAATAAATCTCAAGCTTCAAGATACTGAGACAACCTCTGGTGAGTCAGAAGTAAAGTTTCAGGTGTCCCGGGATACATTGGGTGCTATGCTACGATCAATGGCCTATATCCGTGAGCAGCTTTCTCATGCCGACGATGCACAGTTAGAACCTCTATCCAAGAAGCATAAGAAGTAA 2496 0.3978 MEFDTVDVAKAFYNEYARHMGFSSKVGPYGHSKIDGENYREFVCGREGLRKGLNESCNAMIRIELKSQNKWVVTKLVKEHTHSLFSSSKSHNNHPSKHFSSVGRTMPETYQGVGLVPSGVMYVSMDGNRVSNQNTRGMKNIHTTAAERSHPVKNSSLMNYTVRPSLQNRTLGRDAHNLLEYFKKMQAENPGFFYAIQLDEDNRMSNVFWADARSRTAYSYYGDTVHLDTTYKVNQYRVPFAPFTGVNHHGQMVLFGCALLLDDSEASYLWLLKTFLTAMNDCQPVSITTDQDRALQTAVSQVLPQTRHCISKWHILKEGQEKLAHVCLVHPNFQVELYNCINMTETIDEFESFWSCIIEKYELRRNDWLQSLYNARAQWVPAFFRNSFFAALSPTQGFDSSFFDGYVNQQTTLPLFFRQYERALESWIEKEIEADFETVCTTPVLKTPSPMEKQVANLYTRKIFSKFQDELVETFVYTANRIEGDGPNSTFRVAKFEDDQKAYTVSLNHSELKANCSCQMFEYSGILCRHILTVFTVTNVLTLPPHYILKRWTRNAKNSPGLDEHIGELHAQESLTARYSNLCKEAIRYAEEGAVTVETYNAAISGIREGGKKVANVKRSVAKVSPPNNQAGGIAYDDRKTPTPTSDTTPLLWPRQDEITRRFNLNDAGGPVQSVADLNLPRMAPVSLHRDDGLSENMVVLPCLKSMTWIMENKNSTPGNKVAVINLKLQDYSRVPSTESEVKFHLSRVTLEPMLKSMAYISEQLSTPANKVAVINLKLQDTETTSGESEVKFQVSRDTLGAMLRSMAYIREQLSHADDAQLEPLSKKHKK 831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium15111g00006 831 Pfam SWIM zinc finger 503 537 IPR007527 GO:0008270
Vium15111g00006 831 MobiDBLite consensus disorder prediction 86 104 - -
Vium15111g00006 831 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 1 616 IPR031052 GO:0006355
Vium15111g00006 831 MobiDBLite consensus disorder prediction 623 650 - -
Vium15111g00006 831 Pfam FAR1 DNA-binding domain 12 85 IPR004330 -
Vium15111g00006 831 ProSiteProfiles Zinc finger SWIM-type profile. 503 539 IPR007527 GO:0008270
Vium15111g00006 831 MobiDBLite consensus disorder prediction 84 104 - -
Vium15111g00006 831 SMART 26again6 514 541 IPR006564 GO:0008270
Vium15111g00006 831 Pfam MULE transposase domain 225 317 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium15111g00006 Vium-Chr15111 60746 74099 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vium15111g00006 MULE 3.8e-24 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium15111g00006 - - gmx:100786516 1506.5