Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium15111g00004 ATGGATGTTCAAGTGATAAATGCGGAAGGAAGTGGTCATCAGTCAAAGGCAGATAACGGGGATGCAGAACCAAGTGACAGTGAAGTTAATAATACTGAAAAGTATGGAACTCATGCGGAGGACCGGATTTCTGAACCATATGTGGGTATGGAATTCGACACTGTAGATGTTGCTAAGGCATTTTATAATGAATATGCTAGACACATGGGTTTTAGCTCTAAAGTTGGCCCATATGGTCACTCTAAAATTGATGGGGAAAATTATAGGGAGTTTGTATGTGGTAGGGAAGGTTTAAGAAAAGGACTAAATGAAAGTTGCAATGCAATGATTAGGATCGAGCTAAAGAGTCAAAATAAATGGGTGGTAACAAAATTAGTGAAGGAGCATACTCATTCCCTGTTCAGTTCCAGTAAGTCACACAATAATCACCCAAGTAAGCATTTTTCTAGTGTTGGAAGGACAATGCCGGAAACTTATCAAGGAGTGGGTCTTGTTCCTAGTGGTGTTATGTATGTATCTATGGATGGGAATCGTGTTTCGAATCAGAATACTCGTGGGATGAAGAATATTCATACCACTGCTGCTGAACGAAGTCACCCAGTTAAAAATTCCTCATTGATGAATTATACTGTTAGGCCTTCTTTGCAAAACCGGACATTGGGGAGGGACGCTCATAATCTGCTGGAGTACTTCAAGAAGATGCAGGCTGAGAATCCTGGTTTCTTCTATGCTATACAACTTGATGAAGACAATCGAATGTCTAATGTCTTTTGGGCAGATGCAAGATCAAGGACAGCATACAGTTATTACGGTGACACAGTTCATCTTGACACAACTTACAAAGTAAATCAATATAGAGTGCCATTTGCTCCTTTCACTGGGGTAAATCATCATGGTCAAATGGTTTTGTTTGGTTGTGCGCTCCTTTTGGATGATTCTGAGGCATCTTATTTATGGCTGTTGAAGACATTTCTGACGGCAATGAATGATTGTCAGCCTGTCTCTATAACTACTGATCAAGATAGAGCCTTGCAAACTGCAGTTTCTCAAGTTCTCCCACAAACCCGCCACTGTATTAGCAAGTGGCATATCTTGAAAGAAGGTCAAGAAAAGTTGGCTCATGTATGTCTTGTGCATCCAAATTTTCAGGTTGAACTTTATAATTGTATTAACATGACAGAAACCATTGATGAGTTTGAGTCATTTTGGAGTTGTATCATCGAAAAATATGAACTCAGAAGAAATGATTGGCTCCAGTCATTGTATAATGCTCGTGCTCAATGGGTTCCAGCATTCTTTCGCAATTCGTTTTTTGCAGCATTATCTCCTACTCAAGGTTTTGATAGTTCTTTTTTTGATGGTTATGTCAACCAACAGACAACATTGCCATTGTTCTTCAGGCAGTATGAAAGAGCTTTAGAGAGCTGGATTGAGAAGGAAATAGAAGCAGATTTTGAGACAGTTTGCACAACACCAGTTTTGAAGACACCTTCACCAATGGAGAAACAGGTTGCTAATCTTTATACAAGAAAAATATTTTCAAAGTTTCAAGATGAACTTGTTGAAACTTTTGTTTATACTGCGAATAGAATTGAAGGAGATGGACCAAATAGCACATTTAGAGTTGCAAAATTTGAGGATGACCAGAAGGCATACACGGTCTCATTAAACCATTCTGAGTTGAAAGCTAATTGTAGTTGCCAAATGTTTGAGTATTCAGGCATTCTTTGCAGACATATTTTAACAGTTTTCACCGTGACAAATGTACTTACGTTACCACCCCATTACATCTTGAAACGTTGGACAAGAAATGCAAAAAACAGTCCTGGATTGGATGAACATATCGGTGAGTTACATGCACAGGAATCTTTGACAGCAAGATATAGCAATCTATGCAAGGAAGCCATCAGGTACGCTGAGGAAGGGGCAGTAACTGTGGAAACATATAATGCTGCAATAAGTGGTATTAGAGAAGGTGGAAAGAAGGTTGCTAATGTGAAAAGAAGTGTTGCCAAAGTATCTCCTCCTAACAATCAGGCCGGTGGGATTGCATATGATGACAGGAAAACTCCCACTCCAACTTCAGATACAACTCCTCTTTTATGGCCGCGGCAAGATGAGATAACGAGGAGGTTTAATCTTAATGATGCTGGTGGTCCTGTTCAATCAGTTGCTGATCTAAACTTGCCACGGATGGCCCCAGTCTCTCTTCATCGTGATGATGGCCTATCTGAAAACATGGTAGTTCTTCCATGCCTAAAATCAATGACATGGATAATGGAGAACAAAAACTCAACTCCTGGGAATAAAGTAGCTGTTATCAATCTTAAGTTGCAAGACTATAGCAGGGTTCCATCCACAGAATCTGAGGTTAAGTTTCATCTTTCTAGAGTTACTTTGGAACCAATGTTGAAGTCTATGGCTTACATCAGTGAACAGCTCTCAACACCAGCTAATAAGGTTGCAGTAATAAATCTCAAGCTTCAAGATACTGAGACAACCTCTGGTGAGTCAGAAGTAAAGTTTCAGGTGTCCCGGGATACATTGGGTGCTATGCTACGATCAATGGCCTATATCCGTGAGCAGCTTTCTCATGCCGACGATGCACAGTTAGAACCTCTATCCAAGAAGCATAAGAAGTAA 2643 0.3999 MDVQVINAEGSGHQSKADNGDAEPSDSEVNNTEKYGTHAEDRISEPYVGMEFDTVDVAKAFYNEYARHMGFSSKVGPYGHSKIDGENYREFVCGREGLRKGLNESCNAMIRIELKSQNKWVVTKLVKEHTHSLFSSSKSHNNHPSKHFSSVGRTMPETYQGVGLVPSGVMYVSMDGNRVSNQNTRGMKNIHTTAAERSHPVKNSSLMNYTVRPSLQNRTLGRDAHNLLEYFKKMQAENPGFFYAIQLDEDNRMSNVFWADARSRTAYSYYGDTVHLDTTYKVNQYRVPFAPFTGVNHHGQMVLFGCALLLDDSEASYLWLLKTFLTAMNDCQPVSITTDQDRALQTAVSQVLPQTRHCISKWHILKEGQEKLAHVCLVHPNFQVELYNCINMTETIDEFESFWSCIIEKYELRRNDWLQSLYNARAQWVPAFFRNSFFAALSPTQGFDSSFFDGYVNQQTTLPLFFRQYERALESWIEKEIEADFETVCTTPVLKTPSPMEKQVANLYTRKIFSKFQDELVETFVYTANRIEGDGPNSTFRVAKFEDDQKAYTVSLNHSELKANCSCQMFEYSGILCRHILTVFTVTNVLTLPPHYILKRWTRNAKNSPGLDEHIGELHAQESLTARYSNLCKEAIRYAEEGAVTVETYNAAISGIREGGKKVANVKRSVAKVSPPNNQAGGIAYDDRKTPTPTSDTTPLLWPRQDEITRRFNLNDAGGPVQSVADLNLPRMAPVSLHRDDGLSENMVVLPCLKSMTWIMENKNSTPGNKVAVINLKLQDYSRVPSTESEVKFHLSRVTLEPMLKSMAYISEQLSTPANKVAVINLKLQDTETTSGESEVKFQVSRDTLGAMLRSMAYIREQLSHADDAQLEPLSKKHKK 880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium15111g00004 880 MobiDBLite consensus disorder prediction 672 699 - -
Vium15111g00004 880 Pfam MULE transposase domain 274 366 IPR018289 -
Vium15111g00004 880 MobiDBLite consensus disorder prediction 135 153 - -
Vium15111g00004 880 Pfam SWIM zinc finger 552 586 IPR007527 GO:0008270
Vium15111g00004 880 ProSiteProfiles Zinc finger SWIM-type profile. 552 588 IPR007527 GO:0008270
Vium15111g00004 880 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 37 665 IPR031052 GO:0006355
Vium15111g00004 880 Pfam FAR1 DNA-binding domain 61 134 IPR004330 -
Vium15111g00004 880 MobiDBLite consensus disorder prediction 133 153 - -
Vium15111g00004 880 SMART 26again6 563 590 IPR006564 GO:0008270
Vium15111g00004 880 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium15111g00004 Vium-Chr15111 60745 74099 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vium15111g00004 MULE 4.1e-24 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium15111g00004 - - gmx:100786516 1584.31