Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1510g00001 ATGTTCCCTTACAGTTCCACCCCCTACCCTTCCTTCCCTTCATCATCTTCTTCCTTCCATCCTTTTCCTTTCCTCAACCTTGAGAATGCTTCTGCAGGAAACACCCTTCTTCACGATCCACTTTCCGTGCCTTACTTACCAACTCATCACAACCCTCCAAACATCCAAGAGGCACTGAGCAATTTGCCAGTCTCAGATCATAACTGTGGTGGTGGAGGTTCTGCAATGACCAAACCTGACCCAAGTGGTGGTGGTGCTGCTGCTGCTGCTCCTCACTATGGCCTCTCTTGTTTCCTCACAAAGAAGCCAGTTAAGAAAGACAGGCACAGCAAGATTTACACCTCTCAGGGGTTGAGGGACTGGAGGGTGAGGTTATCCATTGAGATTGCTCGCAAGTTCTTTGATCTTCAAGACATGCTAGGGTTTGACAAAGCCAGCAACACCCTTGAGTGGCTCTTCAACAAGTCCAAGAGAGCAATTAAGGAGCTGGCAAGGAGCAAGAACAGCACCAACAGTGAAGAAGGAGCCAAGAGCTTCTCTTCTTCATCTGAGTGTGATGATGACTGTGAAGTGGTTTCGGAGATCAAGCAGAAGCAACAACTCATCACCGGTGATGCTGCTGCTCCAAACAACCTACAACAAGGGTTAGATTCAAGCGATAACAAGTCACCGACATTTCTGGCTGCAAGGGAGAGGATGAAGTTGAAAAGGGCACAGAAGGAACCTGCAAAGATGAAGGAGTCAAGGGAGAAAGCAAGAGCAAGAGCAAGGGAAAGAACTAGTAACAAGATCATGTGCAATGTTAATTCCAACACAGGGAGGGTGCAACAAGACCTGAGGAAAAAGTGCCCTGCAATTGAAAATAGCCACTCTCATCACCTTGTTGGAAGTGAAACACCTAGAGATGATTTCAACGTTATTGAGGAATCAATTGTGATAAAGAGAAAGTTGAAGCCATCATTGATGTCCTCTTCTCATCACCATCACCAAAACCTTATGATCCCTAAGGAACCACCATGTTTCAACAACAACAACAACATTGAGTACCACCACCCTTTCTCCAATTTATCTCCGAATTGGGATGCTAATGGATCCACTGGCCGCTCCAACTTCTGTGCCATAGCTAGCATGAATCTATCCACAGGGCTTCAAATCTTTGGAAAGTCTTGGGAGGAGTGCACCAATCCACGTTTACACTAG 1200 0.4633 MFPYSSTPYPSFPSSSSSFHPFPFLNLENASAGNTLLHDPLSVPYLPTHHNPPNIQEALSNLPVSDHNCGGGGSAMTKPDPSGGGAAAAAPHYGLSCFLTKKPVKKDRHSKIYTSQGLRDWRVRLSIEIARKFFDLQDMLGFDKASNTLEWLFNKSKRAIKELARSKNSTNSEEGAKSFSSSSECDDDCEVVSEIKQKQQLITGDAAAPNNLQQGLDSSDNKSPTFLAARERMKLKRAQKEPAKMKESREKARARARERTSNKIMCNVNSNTGRVQQDLRKKCPAIENSHSHHLVGSETPRDDFNVIEESIVIKRKLKPSLMSSSHHHHQNLMIPKEPPCFNNNNNIEYHHPFSNLSPNWDANGSTGRSNFCAIASMNLSTGLQIFGKSWEECTNPRLH 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1510g00001 399 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 82 361 IPR005333 GO:0003700
Vium1510g00001 399 ProSiteProfiles TCP domain profile. 105 163 IPR017887 -
Vium1510g00001 399 MobiDBLite consensus disorder prediction 235 259 - -
Vium1510g00001 399 MobiDBLite consensus disorder prediction 164 185 - -
Vium1510g00001 399 ProSiteProfiles R domain profile. 246 263 IPR017888 -
Vium1510g00001 399 Pfam TCP family transcription factor 104 264 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1510g00001 Vium-Chr1510 98157 100248 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1510g00001 101 353 TCP Transcription Factor Family AT1G67260 33.824 5.12e-30 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vium1510g00001 TCP 5.7e-44 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1510g00001 - - gmx:100801549 593.578