Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium150g00003 ATGTGTGATTGTTCCTTCAATAACAACACTTCTTGCCATGTTGTAAGCATATTCTTGAAGGGTCAGAATCTGTCTGGTACTCTCTCACCAATGTTTTCCAAGCTTCAGTATCTCACAATATTAGACCTCAGTCGTAACATCATCACTGGTTCTATACCTCAACAGTGGAGTACCATGGGCTTGGTTGAGATCTCTCTCATGGGAAACAAATTATCAGGGCCATTCCCCAAAGTTCTCACCAATATCACAACCCTCAGAAACTTGAGTATTGAAGGAAACCTATTTTGGGGTCACATTCCAACGGAGATTGAGAAGTTGGTCGATTTAGAAAAACTCGTTCTATCATCCAATGGATTCACAGGAGCTTTGCCACCCTCACTTTCCAAGTTGACCAAGTTGATTGATTTGAGGTTAAGCGACAATAATTTCTTTGGGAAGATACCTGATTTCATTAGTAACTGGACAGTGATAGAAAAGCTGCATATGCACGGTTGTTCTCTTGAGGGGCCAATACCTTCTAGCATTTCTGCCTTGACAAGACTAAGTGATTTGAGGATAACTGACCTAAAAGGGGATAAAACCTCAGCTTTCCCACCACTAAATAACTTGAAATCCATGAAGACATTGGTATTAAGAAATTGCAGGATTAAAGGAAAAATCCCAAAATATATTGGGAGAATGGAAAAACTGAAAATCTTAGATTTGAGTTACAATAACTTGAGTGGAGAGATACCTGAATCTTTTGCCGAACTTGACAAAGTAGACTTCATGTATCTTACTGGGAACAAGTTATCCGGGACTATACCTGCCTGGGTCCTTGGAAATAACAAAAATATTGATGTCTCTAACAATAATTTCTCCTGGGATAGCTCAAGTCCAACTGAATGTCAACGAGGGAGCATAAACCTTGCTGAAAGCTACTCTTCATCTGTAGATACACAAAATAAGATTCATTCATGCTTAAAAAGGAACTTCCCATGCCCTGCTTCAGTTAGCCAATATCAGTACGCCTTGAACATTAATTGTGGTGGTAAGGAAGCAAATATCAGTGGTCATATTTATGAAGCTGACGTTGAACGAAAAGGTGCTGCAATGTTATATACTGGCCAGGTTTGGGCTCTGAGCAGCACTGGAAACTTCATGGACAATGATATTGACTCTGATCCATACATTGTGGCCAATACTTCTAGACTTAATAATGTCTCTGCACTCAGCTCACAACTATACACAACAGCTCGTGTTTCTCCCCTTGCTCTCACATACTATGGCCTCTGCCTAATAAATGGAAATTACACAATCAAGCTTCACTTTGCAGAGATTATTTTCATCAATGATAGATCACTTAATAGTCTCGGAAAGAGGGTATTTGACGTCTATATCCAGGGGAATTTAGAGCTGAAAGACTTTGATATCCAAAGAGAAGCTGGTGGTACTGGCAAGCCAATTGTGAAGACATTCAATGCTACTGTCACCCAACATACTTTGAAGATTCACTTCTACTGGGCTGGAAAAGGAACCACTGGCATTCCCACAAGAGGAGTTTATGGACCCCTAGTTTCTGCTATTTCAGTAAGCCCTAATTTTAAACCTCCATCAAGGAAGGATGACAACAGAACTAATGTCATACTGGCAATTGGCATAGTTGCTGGTGTTTTAGTTCTTCTACTTCTGGGGCTGGTTTTTATGAGGTGGATGGGATGGTTAGGAGGCAAAGATCCAGTGTATAAAGAGCTTAGGGGTATCGATCTGCAGACGGGATTATTTACACTAAGACAAATCAAAGCAGCAACCAAAAACTTTGATGCAACAAACAAAATTGGCGAAGGTGGCTTTGGTTGTGTTTACAAGGGCCTACTGTCAGATGGTACAATAATAGCAGTAAAGCAGCTGTCTTCAAAATCCAAACAAGGAAACCGTGAGTTTGTGAATGAGATGGGATTGATATCTGGACTCCAACATCCCAATCTTGTTAAGCTTTATGGATGTTGTGTGGAGGGGAACCAGCTAATACTGATATATGAGTACATGGAAAATAATTGTCTATCTCGGATTCTTTTTGGGAGGAATCCAGAGAGCAGAATAAGACTAGACTGGCCAACAAGGAAGAAAATTTGTCTTGGTATAGCTAAAGCTTTGGCTTACCTTCATGAAGAGTCCAGAATAAAAATCATACATAGGGATATAAAGGCAAGTAATGTGTTGCTCGACAAGGATTTTAATGCCAAAGTTTCAGATTTTGGCTTGGCAAAACTTATTGAAGATGACAAAACCCATATTAGCACTCGAGTAGCAGGAACAATTGGTTACATGGCTCCTGAGTATGCAATGCGTGGCTATCTAACTGACAAAGCAGATGTTTATAGCTTTGGGGTGGTTGCACTGGAAACTGTCAGCGGAAAGAGCAATACAAATTTCAGGCCAACCGAGGATTTTGTTTATCTTCTTGATTGGGCCTATGTTTTGCAAGAGAGAGGGAGTCTTCTGGAGCTGGTTGACCCAGATTTGGGTTCAGAATATTCAACCGAGGAGGCCATGATGGTGCTAAATGTGGCCCTCTTATGTACCAATGCATCTCCTACACTTAGGCCAACAATGTCCCAAGCTGTGAGCATGCTTGAAGGTTGGACTGATATTCAGGATCTACTTTCTGATCCGGGATATTCAGCTGTTAGTTCCAGTTCCAAATATAAGAGTATAAGAAATCACTTCTGGCAGAATCCTAGTAGAACACATAGCATGTCAATACCTAGTGTATATACTGATTCCTCTGGCTCTCATGTTGAAACAGAAAAGAGCTATCGTCTTGTAACAACAGTTAATTCAGATGGATCAGACAAGTCAAACTAG 2847 0.405 MCDCSFNNNTSCHVVSIFLKGQNLSGTLSPMFSKLQYLTILDLSRNIITGSIPQQWSTMGLVEISLMGNKLSGPFPKVLTNITTLRNLSIEGNLFWGHIPTEIEKLVDLEKLVLSSNGFTGALPPSLSKLTKLIDLRLSDNNFFGKIPDFISNWTVIEKLHMHGCSLEGPIPSSISALTRLSDLRITDLKGDKTSAFPPLNNLKSMKTLVLRNCRIKGKIPKYIGRMEKLKILDLSYNNLSGEIPESFAELDKVDFMYLTGNKLSGTIPAWVLGNNKNIDVSNNNFSWDSSSPTECQRGSINLAESYSSSVDTQNKIHSCLKRNFPCPASVSQYQYALNINCGGKEANISGHIYEADVERKGAAMLYTGQVWALSSTGNFMDNDIDSDPYIVANTSRLNNVSALSSQLYTTARVSPLALTYYGLCLINGNYTIKLHFAEIIFINDRSLNSLGKRVFDVYIQGNLELKDFDIQREAGGTGKPIVKTFNATVTQHTLKIHFYWAGKGTTGIPTRGVYGPLVSAISVSPNFKPPSRKDDNRTNVILAIGIVAGVLVLLLLGLVFMRWMGWLGGKDPVYKELRGIDLQTGLFTLRQIKAATKNFDATNKIGEGGFGCVYKGLLSDGTIIAVKQLSSKSKQGNREFVNEMGLISGLQHPNLVKLYGCCVEGNQLILIYEYMENNCLSRILFGRNPESRIRLDWPTRKKICLGIAKALAYLHEESRIKIIHRDIKASNVLLDKDFNAKVSDFGLAKLIEDDKTHISTRVAGTIGYMAPEYAMRGYLTDKADVYSFGVVALETVSGKSNTNFRPTEDFVYLLDWAYVLQERGSLLELVDPDLGSEYSTEEAMMVLNVALLCTNASPTLRPTMSQAVSMLEGWTDIQDLLSDPGYSAVSSSSKYKSIRNHFWQNPSRTHSMSIPSVYTDSSGSHVETEKSYRLVTTVNSDGSDKSN 948
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium150g00003 948 Gene3D Ribonuclease Inhibitor 97 191 IPR032675 -
Vium150g00003 948 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 335 527 - -
Vium150g00003 948 Gene3D - 332 527 - -
Vium150g00003 948 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 154 302 - -
Vium150g00003 948 FunFam Putative LRR receptor-like serine/threonine-protein kinase 676 884 - -
Vium150g00003 948 SMART serkin_6 600 876 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium150g00003 948 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 570 675 - -
Vium150g00003 948 SUPERFAMILY Protein kinase-like (PK-like) 584 902 IPR011009 -
Vium150g00003 948 SUPERFAMILY L domain-like 4 286 - -
Vium150g00003 948 Gene3D Ribonuclease Inhibitor 1 84 IPR032675 -
Vium150g00003 948 Gene3D Phosphorylase Kinase; domain 1 574 675 - -
Vium150g00003 948 ProSitePatterns Protein kinases ATP-binding region signature. 606 628 IPR017441 GO:0005524
Vium150g00003 948 Pfam Malectin domain 337 522 IPR021720 -
Vium150g00003 948 Gene3D Ribonuclease Inhibitor 192 300 IPR032675 -
Vium150g00003 948 CDD STKc_IRAK 606 874 - -
Vium150g00003 948 Pfam Protein tyrosine and serine/threonine kinase 603 871 IPR001245 GO:0004672|GO:0006468
Vium150g00003 948 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 2 906 - -
Vium150g00003 948 Pfam Leucine rich repeat 205 264 IPR001611 GO:0005515
Vium150g00003 948 Gene3D Transferase(Phosphotransferase) domain 1 676 884 - -
Vium150g00003 948 FunFam Leucine-rich repeat receptor protein kinase EMS1 28 124 - -
Vium150g00003 948 ProSitePatterns Serine/Threonine protein kinases active-site signature. 723 735 IPR008271 GO:0004672|GO:0006468
Vium150g00003 948 ProSiteProfiles Protein kinase domain profile. 600 876 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium150g00003 Vium-Chr150 13205 22171 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium150g00003 136 936 Receptor kinase-like Gene Family AT1G07650 66.047 0.0 1035
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vium150g00003 PK_Tyr_Ser-Thr 2.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium150g00003 - - vun:114195543 1790.78