Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1509g00001 ATGAAAGGAAACAATCCCTATTTGGTTGTGATTCTCATACAAGCCATATATGCTGCCATGTTTCTTCTCTCAAAAGCAGCATTCGATCATGGCATGAACAATTTCATCTTCGTCTTCTATAGACAGGCAATAGCAACCATCTTTTTGACCCCTTTCACTTTCTTCTTCGAATGGAAAACGGCACCTCCTATGCCCTTTTGGACCTTCTGCAAGATTTTCTTCCTTTCTTTCTTTGGGATCACTTTAAGCTTGGACGTATATGGTATCGGGCTTATTTACACCTCAGCAACTTTAGCTGCTGCTACCACAAACTGTCTTCCAGCTATCACCTTCTTCTTGGCACTCCTACTAAGGATCGAGAGTCTGAAAATAAAGACCAGCTCAGGGATTGCTAAGTTGATAGGCATTGAGGCATGTTTGGGTGGTGCAGCAATCCTTGCCTTTTATAAAGGTCCTTCTTTAAGATTCTTAAGTCATTTTCACCTTTTGGATTATCACAAAGGCCTACAACATCAAGGTCATGCTCAATCGGGTGCATGGATAAAGGGTTGTTTCATCATGCTCCTCTCCAACACTTTCTTCGGGCTATGGCTTGTACTGCAGGCTTTTATTATAAAAGGGTACCCTTCAAAGCTACTCTTCACAACTATTCAGTGTTTCTTAAGCTCAATTCAGTCTTTGGTTATTGCCTTGGCAGTAGAAAGAGACTTTGAGCAATGGAAGTTGGGTTGGAATGTCAGACTCCTCGCAGTAATATACTGTGGAATTATGGTGACGGGAGTGACATATTACTTACAAACATGGGTCATAGAGAAAAAAGGACCTGTGTTTCTAGCCATGTCAACTCCACTGGCTCTTATCATTACAATTTTTGCCTCTGCAACTGTCTTTGGAGAGATTATCAGTTTGGGAAGTGTTCTTGGAGGATTGGTGTTGATTCTTGGACTGTACAGCGTGTTGTGGGGAAAGAACAGGGAACATATGCCAAAAGGCACACAAGACGTGGAGCAACAGGCATCTGGAAAATGA 1029 0.4208 MKGNNPYLVVILIQAIYAAMFLLSKAAFDHGMNNFIFVFYRQAIATIFLTPFTFFFEWKTAPPMPFWTFCKIFFLSFFGITLSLDVYGIGLIYTSATLAAATTNCLPAITFFLALLLRIESLKIKTSSGIAKLIGIEACLGGAAILAFYKGPSLRFLSHFHLLDYHKGLQHQGHAQSGAWIKGCFIMLLSNTFFGLWLVLQAFIIKGYPSKLLFTTIQCFLSSIQSLVIALAVERDFEQWKLGWNVRLLAVIYCGIMVTGVTYYLQTWVIEKKGPVFLAMSTPLALIITIFASATVFGEIISLGSVLGGLVLILGLYSVLWGKNREHMPKGTQDVEQQASGK 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1509g00001 342 Pfam EamA-like transporter family 182 320 IPR000620 GO:0016020
Vium1509g00001 342 Pfam EamA-like transporter family 6 131 IPR000620 GO:0016020
Vium1509g00001 342 PANTHER WAT1-RELATED PROTEIN 6 330 IPR030184 GO:0016020|GO:0022857
Vium1509g00001 342 SUPERFAMILY Multidrug resistance efflux transporter EmrE 238 325 - -
Vium1509g00001 342 SUPERFAMILY Multidrug resistance efflux transporter EmrE 40 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1509g00001 Vium-Chr1509 3745 10115 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1509g00001 1 254 Nodulin-like Gene Family AT5G64700 61.240 1.05e-98 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1509g00001 - - gmx:100804562 616.305