Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium15096g00001 ATGGAAAACAACGATATCGGAGCTCCGTCAGATGCCTCGCTCTTTGACCAGATTGTGGCGACGGAGCAACCATACATCCCCATACACTCCGACCCCTCCTATCCTCTCCTCGACACCTTCGTCGACCTTCTCAACGTCGATACCAAACATTTTGATTTCGAAATGTTCAACTCTCCACTGCCTCCTCCTCCGCCGCCAACCGCTCCTCAAGTGTCCGTTCACTCCGAAACCTCGGAGAAACCCAACGAGCAGAGCTCGAAGCCTGCACCAGTAGGGTCCACAGACGGATTCGACAGTGGAAAGTCCGTGGTCTCGGATGATCTCTGCATGGAAGGCGGTGCTAAGAATTCCGGAGAGAACAAGCAGAAGCCGCGTCGGCAGAACGTTCCCCTGGACGCGTCACTGACAGCTTTGATGCAGGCCGGGCCAGCGATTTCTTTGGCGAGGAGGCCCATGGGGCCGGAGGAACTTGCTGAACTTGCTATGGTTGATCCTAAGAAGGCTAAGAGGATTCTTGCTAATAGGGAATCTGCTGCTAAATCAAAGGAAAGGAAAAAGCGTTATTTGATAGAGTTGCAAAAGAATGTGGAATTGCTTGAAATTCAAATAACTAACCTGTTTAATAATATTTGCATGCTTCAGATGGGGAACAGAGGAAGGTCTCTTCATGTAAAGGAGGTCAGAGTAAAATTAGACATCAAGCGAGAAGAAGACCGACTTAAAGATGCTCTGAGTGTTGTGTTGAATGGAGAAATTCAGGGCCTGAAGGATGAAAATAGAAATCTAGATGTTTTATTGAGTTGTCGTTTTCAAGGGAACTTTTTCTCTCCATTCTCTTCCAAGTTACCTCTGCAACAGTTTCATAATCCTCCATCTCAGCAGCATCTGAACCCTCAGCAACCACAACTCTCCAGGGGGCATTATGGCCCTAATATATAA 939 0.4782 MENNDIGAPSDASLFDQIVATEQPYIPIHSDPSYPLLDTFVDLLNVDTKHFDFEMFNSPLPPPPPPTAPQVSVHSETSEKPNEQSSKPAPVGSTDGFDSGKSVVSDDLCMEGGAKNSGENKQKPRRQNVPLDASLTALMQAGPAISLARRPMGPEELAELAMVDPKKAKRILANRESAAKSKERKKRYLIELQKNVELLEIQITNLFNNICMLQMGNRGRSLHVKEVRVKLDIKREEDRLKDALSVVLNGEIQGLKDENRNLDVLLSCRFQGNFFSPFSSKLPLQQFHNPPSQQHLNPQQPQLSRGHYGPNI 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium15096g00001 312 MobiDBLite consensus disorder prediction 71 92 - -
Vium15096g00001 312 SUPERFAMILY Leucine zipper domain 166 214 IPR046347 GO:0003700|GO:0006355
Vium15096g00001 312 CDD bZIP_plant_RF2 167 218 IPR044759 GO:0003700|GO:0006355
Vium15096g00001 312 MobiDBLite consensus disorder prediction 286 312 - -
Vium15096g00001 312 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 71 301 - -
Vium15096g00001 312 Coils Coil 182 209 - -
Vium15096g00001 312 MobiDBLite consensus disorder prediction 55 127 - -
Vium15096g00001 312 SMART brlzneu 162 233 IPR004827 GO:0003700|GO:0006355
Vium15096g00001 312 Gene3D - 165 216 - -
Vium15096g00001 312 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 164 214 IPR004827 GO:0003700|GO:0006355
Vium15096g00001 312 Pfam Basic region leucine zipper 164 214 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium15096g00001 Vium-Chr15096 15751 21355 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium15096g00001 108 256 bZIP Transcription Factor Family AT2G40620 38.000 4.83e-25 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vium15096g00001 bZIP_2 1.1e-07 CL0018