Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium15095g00004 ATGGCCCTCTCAACTCCACACATGCAAAGATTCCTCTCGTGCAAGATCCACAGTCGCTCCACCTCTAAGACCACGCAGAGAAACACTTTCAGCACCACCAGCAGGGGCCGCTGCTGCTCTGCCATAGCCATTGATGCTCCATCTTCTTTAACTGAGGTGCCCGGTGTACGATGGGGGTCCATAGCCTTGCAAGGTCTCCGCGAAGAGATGGAGGATGACATCATTGTTCGACCCGATGGCCTTCAGGGCTTCTCTTTCGCCGCTGTCTTCGATGGCCATGGAGGGTTTTCTTCTGTCGAGTTCCTCAGTGCTAACTACAGGGATGAGCTGTACAAGGAGTGTGTTGAAGCTTTACAAGGTGGATTACTATTAGTGGAGAAAGATTTCAAAGCCATTAAAGGAGCATTGCAGGAGGCATTTCTCAAGGCAGACACGAGATTATTAAAACGGCTTGAAATGAATGGAGAGGAGGATGAATCAGGTGCCACAGCAACTGCCATTTTCATCGGAGATGATGATCTTCTAATTTCACATATCGGTGACTCTTCTGCGGTTCTATGCAGATCTGGAAAAGCAGAAGTTCTGACTAGTCCTCACCGTCCATATGGGAGCAACAAAACTTCTCTTGATGAAATTAGAAGAATAAGAGAAGCAGGTGGATGGATTAGCAACGGTAGAATTTGTGGAGACATTGCTGTATCTCGTGCATTTGGGGACATGCGATTCAAAACGAAGAAGAATGAGATGCTGCAAAAAGGAGTTCAGGAAGGAAAATGGTCAGCAAAGTTCATCTCTCGTGTACAGCTCAACAATGACTTGGTTGTAGCGTACCCTGATATTTATCAGGTAGCTCTTGGCTCAGATGCAGAATTTGTAGTATTAGCAACCGATGGCTTATGGGATTACATGAGCAGGTCTATTACATGA 927 0.4649 MALSTPHMQRFLSCKIHSRSTSKTTQRNTFSTTSRGRCCSAIAIDAPSSLTEVPGVRWGSIALQGLREEMEDDIIVRPDGLQGFSFAAVFDGHGGFSSVEFLSANYRDELYKECVEALQGGLLLVEKDFKAIKGALQEAFLKADTRLLKRLEMNGEEDESGATATAIFIGDDDLLISHIGDSSAVLCRSGKAEVLTSPHRPYGSNKTSLDEIRRIREAGGWISNGRICGDIAVSRAFGDMRFKTKKNEMLQKGVQEGKWSAKFISRVQLNNDLVVAYPDIYQVALGSDAEFVVLATDGLWDYMSRSIT 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium15095g00004 308 PANTHER PROTEIN PHOSPHATASE 2C 32 304 IPR015655 GO:0004722|GO:0006470
Vium15095g00004 308 Pfam Protein phosphatase 2C 59 304 IPR001932 -
Vium15095g00004 308 ProSitePatterns PPM-type phosphatase domain signature. 86 94 IPR000222 GO:0043169
Vium15095g00004 308 SMART PP2C_4 47 308 IPR001932 -
Vium15095g00004 308 SUPERFAMILY PP2C-like 49 305 IPR036457 -
Vium15095g00004 308 CDD PP2Cc 64 304 IPR001932 -
Vium15095g00004 308 Gene3D - 56 306 IPR036457 -
Vium15095g00004 308 ProSiteProfiles PPM-type phosphatase domain profile. 57 308 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium15095g00004 Vium-Chr15095 17063 20237 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium15095g00004 1 306 PP2C-type Phosphatase Gene Family AT4G27800 60.518 1.59e-127 365
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium15095g00004 K04457 - vum:124822920 612.838