Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium15095g00003 ATGGCCCTCTCAACTCCACACATGCAAAGATTCCTCTCGTGCAAGATCCACAGTCGCTCCACCTCTAAGACCACGCAGAGAAACACTTTCAGCACCACCAGCAGGGGCCGCTGCTGCTCTGCCATAGCCATTGATGCTCCATCTTCTTTAACTGAGGTGCCCGGTGTACGATGGGGGTCCATAGCCTTGCAAGGTCTCCGCGAAGAGATGGAGGATGACATCATTGTTCGACCCGATGGCCTTCAGGGCTTCTCTTTCGCCGCTGTCTTCGATGGCCATGGAGGGTTTTCTTCTGTCGAGTTCCTCAGGGATGAGCTGTACAAGGAGTGTGTTGAAGCTTTACAAGGTGGATTACTATTAGTGGAGAAAGATTTCAAAGCCATTAAAGGAGCATTGCAGGAGGCATTTCTCAAGGCAGACACGAGATTATTAAAACGGCTTGAAATGAATGGAGAGGAGGATGAATCAGGTGCCACAGCAACTGCCATTTTCATCGGAGATGATGATCTTCTAATTTCACATATCGGTGACTCTTCTGCGGTTCTATGCAGATCTGGAAAAGCAGAAGTTCTGACTAGTCCTCACCGTCCATATGGGAGCAACAAAACTTCTCTTGATGAAATTAGAAGAATAAGAGAAGCAGGTGGATGGATTAGCAACGGTAGAATTTGTGGAGACATTGCTGTATCTCGTGCATTTGGGGACATGCGATTCAAAACGAAGAAGAATGAGATGCTGCAAAAAGGAGTTCAGGAAGGAAAATGGTCAGCAAAGTTCATCTCTCGTGTACAGCTCAACAATGACTTGGTTGTAGCGTACCCTGATATTTATCAGGTAGCTCTTGGCTCAGATGCAGAATTTGTAGTATTAGCAACCGATGGCTTATGGGATTACATGAGCAGGTCTATTACATGA 915 0.4656 MALSTPHMQRFLSCKIHSRSTSKTTQRNTFSTTSRGRCCSAIAIDAPSSLTEVPGVRWGSIALQGLREEMEDDIIVRPDGLQGFSFAAVFDGHGGFSSVEFLRDELYKECVEALQGGLLLVEKDFKAIKGALQEAFLKADTRLLKRLEMNGEEDESGATATAIFIGDDDLLISHIGDSSAVLCRSGKAEVLTSPHRPYGSNKTSLDEIRRIREAGGWISNGRICGDIAVSRAFGDMRFKTKKNEMLQKGVQEGKWSAKFISRVQLNNDLVVAYPDIYQVALGSDAEFVVLATDGLWDYMSRSIT 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium15095g00003 304 ProSiteProfiles PPM-type phosphatase domain profile. 57 304 IPR001932 -
Vium15095g00003 304 PANTHER PROTEIN PHOSPHATASE 2C 32 300 IPR015655 GO:0004722|GO:0006470
Vium15095g00003 304 ProSitePatterns PPM-type phosphatase domain signature. 86 94 IPR000222 GO:0043169
Vium15095g00003 304 SUPERFAMILY PP2C-like 49 301 IPR036457 -
Vium15095g00003 304 SMART PP2C_4 47 304 IPR001932 -
Vium15095g00003 304 Pfam Protein phosphatase 2C 59 300 IPR001932 -
Vium15095g00003 304 CDD PP2Cc 64 300 IPR001932 -
Vium15095g00003 304 Gene3D - 56 302 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium15095g00003 Vium-Chr15095 17057 20237 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium15095g00003 1 302 PP2C-type Phosphatase Gene Family AT4G27800 61.311 6.83e-130 371
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium15095g00003 K04457 - vum:124822920 598.971