Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1508g00019 ATGAGGAAGTGTGATCTCTGTAACAGTCCTGCAAAGTTGTCGTGTGAATCGGATCAAGCCAGCCTCTGTTGGGAATGCGATGCCAAGGTTCACAGTGCAAACTTCCTCGTCACCAAACATCTCAGGATTCTTCTCTGCCATGTTTGTCAGTCGCTCACGGCTTGGCATGGAACTGGACCCAAGTTTGTACCCACCGTCTCCGTTTGCAACACTTGTGTTAACAACAACCGTGAGAGCCGCAGCCGACAGAATCACGATGAAGATGATGACGACCATAATGATGATGATGATGATGATGATGATGATGATGAGATGGATGACCATGTAGAGAACGATGAGGATGGAGCGGAAGAAGATGATGAAGAAAATCAAGTGGTTCCATGGACATCTACACCACCACCCCCAGCTTCCGCTTCTTCAAATAGTGCTGCAACTAGTTCTACCAGGTCCTCTAACGTTGAAGAGGGGGTCTCAGATTAA 480 0.4771 MRKCDLCNSPAKLSCESDQASLCWECDAKVHSANFLVTKHLRILLCHVCQSLTAWHGTGPKFVPTVSVCNTCVNNNRESRSRQNHDEDDDDHNDDDDDDDDDDEMDDHVENDEDGAEEDDEENQVVPWTSTPPPPASASSNSAATSSTRSSNVEEGVSD 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1508g00019 159 Pfam B-box zinc finger 2 41 IPR000315 GO:0008270
Vium1508g00019 159 CDD Bbox1_BBX-like 3 45 - -
Vium1508g00019 159 MobiDBLite consensus disorder prediction 89 124 - -
Vium1508g00019 159 MobiDBLite consensus disorder prediction 135 159 - -
Vium1508g00019 159 SMART bboxneu5 1 45 IPR000315 GO:0008270
Vium1508g00019 159 MobiDBLite consensus disorder prediction 77 159 - -
Vium1508g00019 159 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 4 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1508g00019 Vium-Chr1508 91035 91865 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1508g00019 2 108 C2C2-CO-like Transcription Factor Family AT4G27310 49.541 9.07e-33 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vium1508g00019 zf-B_box 2.7e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1508g00019 - - vum:124826682 237.654