Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1508g00014 ATGGTTTTCCCAAGTTACACTTGTTTGCTAAATGCTTCGTTCATGGTCTTTTGCATCATTTTCCTGGGTTTGACCTCTGCCAGGGACACCCTTACATATTCTCAATCCATAAGAGACTCAGAGATAGTAACCTCGAACGACAGTGTCTTCGTACTTGGTTTCTTCAGTCCTCAGAATTCAACGCACCGCTACGTAGGAATCTGGTACCTCTCTGACTCCAACGTCATATGGATAGCTAATAGAGACCAACCGCTCCTTGATTCTTCTGGGGTTTTCAAAATCTCCAAAGATGGTAACCTGGTTCTAGTTGATGGAAAAAACCATGTAATTTGGTCGTCCAATGTGTCCAACACTGCAACAACGAACGCCACTGCTCAAATTTCCCGTTATGGGAATCTAATGCTCAAAGACGACTCCACGGGACGGACCATATGGGAGAGTTTCGAGCATCCTTGCGATGCAGCAGTGCCAACCATGAAGATCAGTGCTAACAAAGTCACAGGTGAGAAAATACAGTTTGTGTCAAGGAAAAGTGCTTCCGATCCTTCTACTGGCTATTTCTCTGCTTCTCTTGAGCGTTTGGATGCTCCGGAGGTGTTTCTATGGATTAATGGAACTCGGCCTTATTGGAGGACTGGCCCATGGAATGGTAGAATCTTCATTGGGACACCATTGATGTCAACTGGGTATCTTTATGGATGGAGTGTAGGATATGAAGGAAATGATATTGTTTATCTGACTTACAGTTTTGCTGACCCATCTTCATTTGGAATCCTTACCCTGTCTCCAGAAGGAAAGATTAAATTGGTAAGGTATTATAACAATAAGAAAGGGTTGACTTTGGATCTGGGAATTTCTGATTGCGATGTTTATGGCACATGTGGGGCATTCGGAAGCTGTAATGGGCAGAGTTCACCAATATGTAGCTGTTTGAGTGGATTTGAGGCCAGGAATCAAGAGGAGTGGAGAAAGAAAAATTGGACTAGTGGGTGTGTCAGAAAGGTGCCACTCCAGTGTCAGAGGCTTAACAATGGGGGGAGTGAAGCTGCACAAGAAGATAGATTTTTGAAACTTGAAACAATGAAAGTACCAGATTTTGCAGAGAGATTAGATGTTGAGGAAGGTCAGTGTGGAACACAGTGCTTGAAGAATTGCTCTTGTTTGGCATATGCATACGATGCTGGCATTGGATGCATGTATTGGACTAGAGACTTAATTGACTTGCAAAAATTCCAAACTGCAGGCATTGATCTCTACATCCGTCTCGCCAATTCAGAATTTCAATCCAGTAATGCACAAGAGCATACTAATAAAAGAATAGCCAAGGAATTAATCATCGGAATTACAGCGGCAACTGCTGGACCAATCATCGTGGCCATCTGTGTTTATATAGTCATTCGTAGACATCACTCGCGTAAGGGAACTGCCAAAGATTCGGGAAGTGAGAAACACTTAGTAACTGCGGTCCAGAAACCAGCAAAACTGGATGAGCTACCGTTATTTGAATTTGAAGTCGTTGAAAATGCTACAAACAGTTTTCACTTAGCTAATACGCTTGGAAAGGGTGGTTTTGGTCCAGTGTACAAGGGACTACTGCCAGATGGTCAAGAAATTGCTGTGAAAAGACTCTCAAGAGCATCTGGACAAGGTGTAGAAGAATTTATGAATGAAGTGATGGTGATTTCTAAACTTCAACATCGCAATCTTGTAAAACTTCTTGGCTGCTGCATTGAAGGAGACGAGAAGATGCTCATATATGAATTCATGCCAAATAAAAGTTTGGATGCATTCATCTTTGATCCACTACGGCGGAAACTTCTAGACTGGACAAAACGTTTTACTATAGTTGAAGGAGTTGCTCGGGGCTTACTCTATCTCCATAGGGATTCTAGATTAAAAATTATACATAGAGATCTGAAGGCAAGCAATATCTTACTAGATGCAGATATGAATCCCAAAATATCAGACTTTGGTTTGGCTAGAATATACAAAGGCGAGGATGAAGTTAATACCAAGAGGGTTGTTGGCACATATGGCTACATGTCCCCTGAATATGCTATGGAAGGATTGTTTTCTGAGAAATCAGATGTGTATAGCTTCGGAGTTTTGCTACTAGAGATTATCAGTGGAAAAAGGAACACTAGTTTTCGAAATGATGACCAGTCTCTCAGCCTTATAGGATATGCGTGGAATCTATGGAACGAAGACAATATTAGGCTTTTGGTTGATCCAGAGATATCAGCTTCAGGATCTGAGAATCATATTTTGAGGTGCATCCACATTGCATTTCTTTGTGTGCAAGAAGTTGCAAAAACTAGACCAACTATGACTACTGTGCTCTCAATGCTTAACAGTGAGATTTCCCATCTACCTCCTCCTAGGCAAGTTGCATTTGTTCAGAAGCAAAGTTCATCAAGTTTAGAGTCTTCTTCTCAAGAAAATAATTGTAACTCCAACAACCATGTAACTCTTACTGATATCCAAGGGAGATAA 2493 0.4148 MVFPSYTCLLNASFMVFCIIFLGLTSARDTLTYSQSIRDSEIVTSNDSVFVLGFFSPQNSTHRYVGIWYLSDSNVIWIANRDQPLLDSSGVFKISKDGNLVLVDGKNHVIWSSNVSNTATTNATAQISRYGNLMLKDDSTGRTIWESFEHPCDAAVPTMKISANKVTGEKIQFVSRKSASDPSTGYFSASLERLDAPEVFLWINGTRPYWRTGPWNGRIFIGTPLMSTGYLYGWSVGYEGNDIVYLTYSFADPSSFGILTLSPEGKIKLVRYYNNKKGLTLDLGISDCDVYGTCGAFGSCNGQSSPICSCLSGFEARNQEEWRKKNWTSGCVRKVPLQCQRLNNGGSEAAQEDRFLKLETMKVPDFAERLDVEEGQCGTQCLKNCSCLAYAYDAGIGCMYWTRDLIDLQKFQTAGIDLYIRLANSEFQSSNAQEHTNKRIAKELIIGITAATAGPIIVAICVYIVIRRHHSRKGTAKDSGSEKHLVTAVQKPAKLDELPLFEFEVVENATNSFHLANTLGKGGFGPVYKGLLPDGQEIAVKRLSRASGQGVEEFMNEVMVISKLQHRNLVKLLGCCIEGDEKMLIYEFMPNKSLDAFIFDPLRRKLLDWTKRFTIVEGVARGLLYLHRDSRLKIIHRDLKASNILLDADMNPKISDFGLARIYKGEDEVNTKRVVGTYGYMSPEYAMEGLFSEKSDVYSFGVLLLEIISGKRNTSFRNDDQSLSLIGYAWNLWNEDNIRLLVDPEISASGSENHILRCIHIAFLCVQEVAKTRPTMTTVLSMLNSEISHLPPPRQVAFVQKQSSSSLESSSQENNCNSNNHVTLTDIQGR 830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1508g00014 830 SMART blect_4 34 151 IPR001480 -
Vium1508g00014 830 SUPERFAMILY Protein kinase-like (PK-like) 497 814 IPR011009 -
Vium1508g00014 830 Pfam S-locus glycoprotein domain 210 317 IPR000858 GO:0048544
Vium1508g00014 830 SMART ntp_6 350 422 IPR003609 -
Vium1508g00014 830 Gene3D Transferase(Phosphotransferase) domain 1 589 792 - -
Vium1508g00014 830 Pfam D-mannose binding lectin 75 177 IPR001480 -
Vium1508g00014 830 ProSitePatterns Serine/Threonine protein kinases active-site signature. 634 646 IPR008271 GO:0004672|GO:0006468
Vium1508g00014 830 CDD PAN_AP_plant 335 423 - -
Vium1508g00014 830 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 24 148 - -
Vium1508g00014 830 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 14 774 - -
Vium1508g00014 830 CDD B_lectin 34 151 IPR001480 -
Vium1508g00014 830 ProSiteProfiles Protein kinase domain profile. 513 787 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1508g00014 830 CDD STKc_IRAK 519 784 - -
Vium1508g00014 830 SUPERFAMILY alpha-D-mannose-specific plant lectins 65 180 IPR036426 -
Vium1508g00014 830 FunFam receptor-like serine/threonine-protein kinase SD1-8 486 588 - -
Vium1508g00014 830 MobiDBLite consensus disorder prediction 808 830 - -
Vium1508g00014 830 Pfam Protein tyrosine and serine/threonine kinase 514 782 IPR001245 GO:0004672|GO:0006468
Vium1508g00014 830 PIRSF SRK 1 830 IPR024171 GO:0004674
Vium1508g00014 830 Gene3D Phosphorylase Kinase; domain 1 487 588 - -
Vium1508g00014 830 ProSiteProfiles PAN/Apple domain profile. 339 423 IPR003609 -
Vium1508g00014 830 Gene3D - 24 148 IPR036426 -
Vium1508g00014 830 SMART serkin_6 513 788 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1508g00014 830 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 589 791 - -
Vium1508g00014 830 ProSiteProfiles Bulb-type lectin domain profile. 28 148 IPR001480 -
Vium1508g00014 830 Pfam PAN-like domain 350 408 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1508g00014 Vium-Chr1508 54180 57571 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1508g00014 451 811 Receptor kinase-like Gene Family AT4G05200 51.902 4.97e-124 387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vium1508g00014 PK_Tyr_Ser-Thr 5.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1508g00014 - - gmx:112998788 1447.95