Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1508g00012 ATGATACACTGGCAATTGGTACAGGTTATGCGATTCGTAAGAAACATGTTACCCGCTTTTCTCATTCTGTTGTCGAACTTGTACATGAGTTTTGGAGCTGGCTTAGACACCATTACAGTGTCTCAATTGATGTCAGACCCTGAAACCTTGACCTCTAATGACGGCGCATTCAAGCTAGGATTCTTCAGCCCTGCAAACACAACAAATCGGTATGTAGGGGTTTGGTATCTCACTGAATCCAATGTCATATGGGTGGCCAACAGAGCCCGACCGCTAGAGGATTCTTCAGGGGTTGTCACCATATCCAATGACAGAAACCTTGTAGTACTAAATGGAAAAAAGCAAGCTGTTTGGTCATCAAATGTCTCAAATATTGAGTCCAATACAACTGTGCAACTTCAAAATACTGGAAACATTGTCTTGCTGGATAGCCTCACAGGCAAGACAATTTGGGAGAGTTTCAAACAACCCACTGACACATTCCTGCCAAACATGATAATCAGCAGCAACCAAGTGACGGGGAAGAAAGACAAAAAGACTTCATGGAAAAACCCTTCTGATCCGGCCGTTGGAATCTTCTCCGCCAGCCTCGAACGTCTAAGTCTTCCTGAAGTGTTTGTCTGGAATCAAACACAGCCGTATTGGCGCTCGGGTCCATGGAACGGTCAGGTTTTTATTGGTTTGCCAAGGATGTATACTTCTGCATATCTGAATGGATTCAGTTTAGCAAGGGAAGATGATGGAACTGTCAGTATGGTCTATAGTTTGCCAAATCATTCTTTCTTTGGAACCATGGCCTTGAGTTCAGAAGGCAGGCTAGTTTACAGCTCCTGGATGAACAGACGTCAAGTTGGGAAGCGGGTCATTTACTACAGTAACTGTGATATTTATGGCTTCTGCGGCGCTTATGGAAGTTGTGATCCCGATAAGGTGCCAATATGCAGCTGTTTGAGAGGGTTTGAGCCGAAAAACCGCGAGGAATGGGATACGCAAAACTGGACAAGTGGATGTGTGAGAAAGGAAGCACTCAAGTGCGAGAGGAGTGAAGCCAGCACAGGAGACGGGTTTGAGAAATTGCAGATGTCTAAGGTGCCAGATTTTGCACTCCAATCATCTGTTTCTATTGATACATGCAGAACAGAGTGCCTGAACAAATGCTCCTGTACAGCATATGCATATGATGCTGGCATTGGCTGTATGTCTTGGAAGGGCGAGTTAATTGACATCGTAAGGTTCTCAAGTGGAGGACTCGATCTTTACATCCGCCAAGCTCCTTCAGAACTCAGTAACAATACAGATGGGGGGAGAAACATGACATCAATCATTGTAGTTACAGTGATAGTGGGAGCATTTCTTTTTGCTACTTGTGTATATTTTTTATGGAGATGGACTTCTAAGCGTTCTGCAAGAACGGAAAGATCACCATCATTGGTGCTGAGCATAAGGGAAAACCATCCAGAAAAAAGAATTGCAGGTTTGAGTGGAGAGCTGGAACAAGTTAAAATCCAGGACGTGCCAGTATTTAATTTTGAAAACATTGCAACTTCAACAAATCACTTCAATTTAGCTAATAAGCTAGGCGAAGGTGGTTTTGGTTCGGTGTACGAGGGAGAATTAAAAAATGGGCAAAAAGTAGCAGTAAAACGACTTTCAAGAGCATCTAGGCAGGGGACAGAAGAATTTATAAATGAAGTGACAGTAATTTCAAAACTTCAACACCGTAATCTTGTAAGACTCCTAGGTTGCTGTATTGAAGGAGGGGAGAGGATGTTGATATTTGAGTACATGCCGAATAAGAGTTTGGACTTTTATCTGTTTGATCCAGCCAAAAAGTCAGTTTTAGATTGGCAGAAAAGATTTAATATAATTGAAGGAGTCTCAAGAGGTTTGCTTTATCTCCATAGAGATTCTAGACTGAGGATAATACACAGAGACCTGAAGCCAAGTAATATCCTGTTGGATGCAGCCCTGAATCCAAAAATATCAGATTTTGGAATGGCCAAAATCTTTGGGGGCAGCGAAGATGAGGCCAATACTAGAAGGGTTGTTGGAACATATGGCTACATGTCTCCTGAATATGCGATGCAAGGACTATTTTCAGAGAAATCAGATGTGTTTAGTTATGGAGTTTTTCTGTTAGAGATCGTTAGTGGCAGAAAAAATTCAAGTTTTGGAAACGAAGAGGAGTCACTGAGCCTCTTAGGATATGCATGGAAACTATGGAACGAAGGGGAGATTGAATCTCTGATTGATCCAGAAATATTTAATCCAGAGAATGTTGAACACGTATTGAGATGCATACACATTGGACTTCTTTGTGTGCAAGAATTAGCGAAGGAGAGGCCTACTATGGCCATTGTGTTGTCAATGCTAAACAGTGAGATTGTTAATTTTCCTCCTCCTCGACAACCAGCGTTCATCCAAAGACACACCGAGTTAGAAGGAGAATCGTCTCAGCGGAGTCACGAATCAAATTCCATCAACAGTGTCACTGTAACAAGCGTGCATGGCAGATAG 2517 0.4251 MIHWQLVQVMRFVRNMLPAFLILLSNLYMSFGAGLDTITVSQLMSDPETLTSNDGAFKLGFFSPANTTNRYVGVWYLTESNVIWVANRARPLEDSSGVVTISNDRNLVVLNGKKQAVWSSNVSNIESNTTVQLQNTGNIVLLDSLTGKTIWESFKQPTDTFLPNMIISSNQVTGKKDKKTSWKNPSDPAVGIFSASLERLSLPEVFVWNQTQPYWRSGPWNGQVFIGLPRMYTSAYLNGFSLAREDDGTVSMVYSLPNHSFFGTMALSSEGRLVYSSWMNRRQVGKRVIYYSNCDIYGFCGAYGSCDPDKVPICSCLRGFEPKNREEWDTQNWTSGCVRKEALKCERSEASTGDGFEKLQMSKVPDFALQSSVSIDTCRTECLNKCSCTAYAYDAGIGCMSWKGELIDIVRFSSGGLDLYIRQAPSELSNNTDGGRNMTSIIVVTVIVGAFLFATCVYFLWRWTSKRSARTERSPSLVLSIRENHPEKRIAGLSGELEQVKIQDVPVFNFENIATSTNHFNLANKLGEGGFGSVYEGELKNGQKVAVKRLSRASRQGTEEFINEVTVISKLQHRNLVRLLGCCIEGGERMLIFEYMPNKSLDFYLFDPAKKSVLDWQKRFNIIEGVSRGLLYLHRDSRLRIIHRDLKPSNILLDAALNPKISDFGMAKIFGGSEDEANTRRVVGTYGYMSPEYAMQGLFSEKSDVFSYGVFLLEIVSGRKNSSFGNEEESLSLLGYAWKLWNEGEIESLIDPEIFNPENVEHVLRCIHIGLLCVQELAKERPTMAIVLSMLNSEIVNFPPPRQPAFIQRHTELEGESSQRSHESNSINSVTVTSVHGR 838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1508g00012 838 ProSiteProfiles Bulb-type lectin domain profile. 35 154 IPR001480 -
Vium1508g00012 838 PIRSF SRK 7 838 IPR024171 GO:0004674
Vium1508g00012 838 ProSitePatterns Protein kinases ATP-binding region signature. 526 548 IPR017441 GO:0005524
Vium1508g00012 838 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 31 154 - -
Vium1508g00012 838 SMART serkin_6 520 796 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1508g00012 838 MobiDBLite consensus disorder prediction 812 838 - -
Vium1508g00012 838 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 596 799 - -
Vium1508g00012 838 SUPERFAMILY Protein kinase-like (PK-like) 505 828 IPR011009 -
Vium1508g00012 838 Gene3D Transferase(Phosphotransferase) domain 1 596 797 - -
Vium1508g00012 838 Pfam Domain of unknown function (DUF3403) 793 838 IPR021820 GO:0004674
Vium1508g00012 838 CDD B_lectin 41 157 IPR001480 -
Vium1508g00012 838 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 487 595 - -
Vium1508g00012 838 ProSitePatterns Serine/Threonine protein kinases active-site signature. 641 653 IPR008271 GO:0004672|GO:0006468
Vium1508g00012 838 Pfam S-locus glycoprotein domain 215 324 IPR000858 GO:0048544
Vium1508g00012 838 Pfam D-mannose binding lectin 82 183 IPR001480 -
Vium1508g00012 838 SMART ntp_6 351 423 IPR003609 -
Vium1508g00012 838 CDD STKc_IRAK 526 792 - -
Vium1508g00012 838 Pfam Protein tyrosine and serine/threonine kinase 521 788 IPR001245 GO:0004672|GO:0006468
Vium1508g00012 838 CDD PAN_AP_plant 343 422 - -
Vium1508g00012 838 SUPERFAMILY alpha-D-mannose-specific plant lectins 72 188 IPR036426 -
Vium1508g00012 838 Gene3D Phosphorylase Kinase; domain 1 495 595 - -
Vium1508g00012 838 Pfam PAN-like domain 350 409 IPR003609 -
Vium1508g00012 838 ProSiteProfiles PAN/Apple domain profile. 345 424 IPR003609 -
Vium1508g00012 838 MobiDBLite consensus disorder prediction 820 838 - -
Vium1508g00012 838 ProSiteProfiles Protein kinase domain profile. 520 806 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1508g00012 838 SMART blect_4 41 157 IPR001480 -
Vium1508g00012 838 Gene3D - 33 155 IPR036426 -
Vium1508g00012 838 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 23 782 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1508g00012 Vium-Chr1508 46725 49758 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1508g00012 425 835 Receptor kinase-like Gene Family AT4G05200 48.441 1.76e-123 386
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vium1508g00012 Pkinase 2.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1508g00012 - - gmx:112998788 1340.87