Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1508g00011 ATGGCGGCGATGTCCATCTCCGTCGTCTTTCTCTTCTCTTTCATCTCTTTTCACCGTATGTATTCCTTGGCGGCAAGTTCAGAGATCATTATCACACAGGACGTCGTTATCAGGGACGAGGGGCTTGAGACATTGGTGTCTGAAGAGCTCAACTTCACCTTCGGTTTCTTCGGTTCGGACAACTCCTCTTCCCGCTACGTCGGAATTTGGTACCACAGCATTCCCGCGACACCTGTTATATGGGTCGCAAACGGCGACAAACCCATCAACGGCACAGGAGGATCCATCACTATTGCGGATGACGGCAACCTCGTAGTCCACGATGGTGCCAAGAACCTTGTCTGGTCCACCCAAGTTTCCATCGATAGCAGCACCAAAAACTGCTCGGCGAAGCTTCGTGAAACTGGTAACCTCGTTCTCTCATGCGAAAGGAAAGACTTGTGGCAAAGCTTTGAGAATCCAACGGATACATTCATGCCTGGTATGAGGGTTCCAGTGGGGGCTTCAACTGGGAATAGTAGTGGCTATGTGTTCACTTCATGGAAATCGTCAACGGATCCTTCGAAGGGAAACTACACCATGGGGGTGGATCCTAAAGGGTTACCTCAGATAGTGGTTTGGGAAGGAGACAAAAGAAGGTGGAGAACGGGGTATTGGGATGGTATAATGTTTGAAGGGGTGTCTATGGCAGGAAATTATCTTTACGGTTTTACGCTTAATGGGGATGGTAAAGGAGGTAGGTATTTCATATATAACCCCGGCACTGATAAGGTGAGGTTTCAAATTGGGTGGGATGGCTATGAGAGAGAGTTCAGGTGGAATGAGGATGAGAAACGCTGGGATGTGGTTCAGAGAGGGCCTTCGCATGAGTGTGAGGTTTACAACAAGTGTGGGAGTTTCGCGGCGTGTGATATGGCCACTTCGAATTCACCTGTTTGTACTTGCATACGAGGTTTTGAACCGAAGAACAGGGATCGGTGGGGTAAGGGGAACTGGTCGGGTGGGTGTACGAGGATGACTCCACTCAAGGCTCAGAGGGAGAATGTTACTTCCGCTGACACTACTCAGGTTAGCGTCGGAGAGGATAAGTTCTTGGAGCTTAGTTCTATGAGGTTGCCGGATTTCGCAAGTGTGGTTGGCACGAATGATTGTCAGAAAGTGTGTTTGAACGATGATTCTTGTACGGCATATGCCAATGTTAATGGAATAGGGTGCATGGTGTGGAATGTCGATTTGGTTGACATTCAACATCATGGTACTGGAGGAAATACACTCAATATCCGTCTCGCTCATTCTGATTTAGATGGAGGTAAAAAGAACATGATTGCGATAATATCTGCTGTTGTGGCGGGGTTAATCTGCCTAGGAATCATTGTATGGCTGGTGTATAGATTCAAGGGAAAACTTAAAGTTCTGCCTACAGTTTCCTCAGCTTCTTGTTGCAAGAATAGTGATGTACTGCCAGTTTATGATGGAAGCAGGAGCAGAGATATGTCAGCAGAATTTTCAGGATCAGCTGATCATAGTTTGGAGGGGAGCCAGCTAAGCGGGCCAGAATTTCCACTTTTCAATTTCAGTTGCATTTCAATAGCCACAAACAATTTTTCAGAAGAAAATAAGCTTGGCAAAGGTGGCTTTGGACCTGTCTACAAGGGAAAGCTTCCAGGCGGAGAACAAATAGCTGTTAAGAGGCTTTCAAGACGGTCTGGTCAAGGCTTAGAGGAGTTCAAGAATGAAATGATGCTGATAGCCAAACTACAGCACCGAAATCTGGTTAGACTAATGGGTTGTAGTATTCAAGGGGAAGAGAAGTTGCTGGTGTATGAATACATGCCAAACAAAAGCTTGGATTGTTTTTTATTTGATCCATTCAAACAAACACAACTAGATTGGAGAAGACGGTTTGAAATCATTGAAGGCATTGCAAGAGGATTGCTCTACCTGCACCGAGATTCAAGACTTAGAATAATTCATCGAGATTTAAAAGCGAGTAACATTTTGCTGGATGAAAACATGAACCCAAAGATATCAGACTTTGGATTGGCTAGGATATTTGGTGGGAACCAGAATGAAGCCAATACAAACAGAGTAGTTGGTACATATGGTTATATGGCCCCTGAGTATGCAATGGAAGGTCTGTTTTCTGTCAAATCGGATGTATATAGTTTTGGTGTATTACTACTAGAAATTTTGAGTGGCCGCAGAAACACCAGTTTTCGACACTCTGATGACTCCAGCCTCATAGGATATGCGTGGCATCTTTGGAATGAACAGAGAGCAATGGAGCTAATCGATCCATGCATTCGTGATTGTAGTCCTAAAAGCAGAGCTTTGAGATGCATACACATAGGGATGTTATGTGTGCAAGATTCAGCAGCTCATAGACCAAACATGTCAGCTGTGGTGTTGATGCTGGAAAGTGAAGCAACAACTCTTCCCACGCCTACGCAACCTTTGATTACTTCCATGAGGAGAACTGAGGACAGACAATTTTACATGGAAGGCCTTGATGTTTCAAATGATTTGACAGTCACAATGGTGGTAGGGAGATAG 2553 0.4512 MAAMSISVVFLFSFISFHRMYSLAASSEIIITQDVVIRDEGLETLVSEELNFTFGFFGSDNSSSRYVGIWYHSIPATPVIWVANGDKPINGTGGSITIADDGNLVVHDGAKNLVWSTQVSIDSSTKNCSAKLRETGNLVLSCERKDLWQSFENPTDTFMPGMRVPVGASTGNSSGYVFTSWKSSTDPSKGNYTMGVDPKGLPQIVVWEGDKRRWRTGYWDGIMFEGVSMAGNYLYGFTLNGDGKGGRYFIYNPGTDKVRFQIGWDGYEREFRWNEDEKRWDVVQRGPSHECEVYNKCGSFAACDMATSNSPVCTCIRGFEPKNRDRWGKGNWSGGCTRMTPLKAQRENVTSADTTQVSVGEDKFLELSSMRLPDFASVVGTNDCQKVCLNDDSCTAYANVNGIGCMVWNVDLVDIQHHGTGGNTLNIRLAHSDLDGGKKNMIAIISAVVAGLICLGIIVWLVYRFKGKLKVLPTVSSASCCKNSDVLPVYDGSRSRDMSAEFSGSADHSLEGSQLSGPEFPLFNFSCISIATNNFSEENKLGKGGFGPVYKGKLPGGEQIAVKRLSRRSGQGLEEFKNEMMLIAKLQHRNLVRLMGCSIQGEEKLLVYEYMPNKSLDCFLFDPFKQTQLDWRRRFEIIEGIARGLLYLHRDSRLRIIHRDLKASNILLDENMNPKISDFGLARIFGGNQNEANTNRVVGTYGYMAPEYAMEGLFSVKSDVYSFGVLLLEILSGRRNTSFRHSDDSSLIGYAWHLWNEQRAMELIDPCIRDCSPKSRALRCIHIGMLCVQDSAAHRPNMSAVVLMLESEATTLPTPTQPLITSMRRTEDRQFYMEGLDVSNDLTVTMVVGR 850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1508g00011 850 CDD STKc_IRAK 541 806 - -
Vium1508g00011 850 Gene3D - 33 151 IPR036426 -
Vium1508g00011 850 SMART blect_4 34 154 IPR001480 -
Vium1508g00011 850 CDD PAN_AP_plant 361 430 - -
Vium1508g00011 850 Pfam S-locus glycoprotein domain 214 323 IPR000858 GO:0048544
Vium1508g00011 850 Pfam Protein tyrosine and serine/threonine kinase 538 803 IPR001245 GO:0004672|GO:0006468
Vium1508g00011 850 PIRSF SRK 1 850 IPR024171 GO:0004674
Vium1508g00011 850 ProSiteProfiles PAN/Apple domain profile. 359 430 IPR003609 -
Vium1508g00011 850 SMART serkin_6 535 781 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1508g00011 850 ProSitePatterns Serine/Threonine protein kinases active-site signature. 656 668 IPR008271 GO:0004672|GO:0006468
Vium1508g00011 850 ProSiteProfiles Protein kinase domain profile. 535 820 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1508g00011 850 SMART ntp_6 359 429 IPR003609 -
Vium1508g00011 850 CDD B_lectin 43 154 IPR001480 -
Vium1508g00011 850 SUPERFAMILY Protein kinase-like (PK-like) 520 832 IPR011009 -
Vium1508g00011 850 Pfam PAN-like domain 360 415 IPR003609 -
Vium1508g00011 850 SUPERFAMILY alpha-D-mannose-specific plant lectins 78 221 IPR036426 -
Vium1508g00011 850 Pfam D-mannose binding lectin 79 182 IPR001480 -
Vium1508g00011 850 Gene3D Transferase(Phosphotransferase) domain 1 611 816 - -
Vium1508g00011 850 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 23 151 - -
Vium1508g00011 850 Gene3D Phosphorylase Kinase; domain 1 511 610 - -
Vium1508g00011 850 ProSiteProfiles Bulb-type lectin domain profile. 27 153 IPR001480 -
Vium1508g00011 850 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 611 813 - -
Vium1508g00011 850 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 500 610 - -
Vium1508g00011 850 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 17 796 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1508g00011 Vium-Chr1508 37513 41447 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1508g00011 434 818 Receptor kinase-like Gene Family AT4G23230 53.368 2.58e-133 410
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vium1508g00011 PK_Tyr_Ser-Thr 4.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1508g00011 - - gmx:102660295 1438.32